Package com.compomics.util.experiment.mass_spectrometry.proteowizard

Class MsConvertParameters

java.lang.Object

com.compomics.util.experiment.mass_spectrometry.proteowizard.MsConvertParameters

public class MsConvertParameters
extends Object

The parameters to use when running msconvert.

Author:

Marc Vaudel

Constructor Summary

Constructors

Constructor	Description
MsConvertParameters()	Constructor.

Method Summary

Modifier and Type	Method	Description
void	addFilter(Integer msConvertFilterIndex, String value)	Adds a filter.
Set<Integer>	getFilters()	Returns the index of the filters selected.
HashMap<Integer,String>	getFiltersMap()	Returns the filters map, filter index - value.
ProteoWizardMsFormat	getMsFormat()	Returns the format to convert to.
String	getValue(int msConvertFilterIndex)	Returns the value set for a given filter.
void	setMsFormat(ProteoWizardMsFormat msFormat)	Sets the format to convert to.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

MsConvertParameters

public MsConvertParameters()

Constructor.

Method Details

getMsFormat

public ProteoWizardMsFormat getMsFormat()

Returns the format to convert to.

Returns:

the format to convert to

setMsFormat

public void setMsFormat(ProteoWizardMsFormat msFormat)

Sets the format to convert to.

Parameters:

msFormat - the format to convert to

getFilters

public Set<Integer> getFilters()

Returns the index of the filters selected.

Returns:

the index of the filters selected

addFilter

public void addFilter(Integer msConvertFilterIndex,
 String value)

Adds a filter.

Parameters:

msConvertFilterIndex - the index of the filter according to the MsConvertFilter enumerator.

value - the value of the filter according to the filter specifications.

getValue

public String getValue(int msConvertFilterIndex)

Returns the value set for a given filter.

Parameters:

msConvertFilterIndex - the index of the filter of interest.

Returns:

the value set by the user

getFiltersMap

public HashMap<Integer,String> getFiltersMap()

Returns the filters map, filter index - value.

Returns:

the filters map