Package com.compomics.util.experiment.mass_spectrometry.thermo_raw_file_parser

Class ThermoRawFileParserParameters

java.lang.Object

com.compomics.util.experiment.mass_spectrometry.thermo_raw_file_parser.ThermoRawFileParserParameters

public class ThermoRawFileParserParameters
extends Object

The parameters to use when running ThermoRawFileParser.

Author:

Harald Barsnes

Constructor Summary

Constructors

Constructor	Description
ThermoRawFileParserParameters()	Constructor.

Method Summary

Modifier and Type	Method	Description
ThermoRawFileParserOutputFormat	getOutputFormat()	Returns the format to convert to.
boolean	isPeackPicking()	Returns true if peak picking is to be performed.
void	setMsFormat(ThermoRawFileParserOutputFormat outputFormat)	Sets the format to convert to.
void	setPeackPicking(boolean peackPicking)	Set if peak picking is to be performed.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

ThermoRawFileParserParameters

public ThermoRawFileParserParameters()

Constructor.

Method Details

getOutputFormat

public ThermoRawFileParserOutputFormat getOutputFormat()

Returns the format to convert to.

Returns:

the format to convert to

setMsFormat

public void setMsFormat(ThermoRawFileParserOutputFormat outputFormat)

Sets the format to convert to.

Parameters:

outputFormat - the format to convert to

isPeackPicking

public boolean isPeackPicking()

Returns true if peak picking is to be performed.

Returns:

the peackPicking true if peak picking is to be performed

setPeackPicking

public void setPeackPicking(boolean peackPicking)

Set if peak picking is to be performed.

Parameters:

peackPicking - the peackPicking to set