Uses of Enum
com.compomics.util.experiment.quantification.spectrumcounting.SpectrumCountingMethod

Packages that use SpectrumCountingMethod

Package	Description
com.compomics.util.experiment.identification.features	Classes for the generation of identification features.
com.compomics.util.experiment.quantification.spectrumcounting	Experiment classes related to spectrum counting.
com.compomics.util.parameters.quantification.spectrum_counting	Spectrum counting parameters.

Uses of SpectrumCountingMethod in com.compomics.util.experiment.identification.features

Methods in com.compomics.util.experiment.identification.features with parameters of type SpectrumCountingMethod

Modifier and Type	Method	Description
double	IdentificationFeaturesGenerator.getNormalizedSpectrumCounting(long proteinMatchKey, Metrics metrics, UnitOfMeasurement unit, Double referenceMass, SpectrumCountingMethod method)	Returns the spectrum quantification metric of the protein match of interest using the preference settings normalized to the injected protein amount.
double	IdentificationFeaturesGenerator.getNormalizedSpectrumCounting(long proteinMatchKey, UnitOfMeasurement unit, SpectrumCountingMethod method)	Returns the spectrum quantification metric of the protein match of interest using the preference settings normalized to the injected protein amount.
Double	IdentificationFeaturesGenerator.getSpectrumCounting(long proteinMatchKey, SpectrumCountingMethod method)	Returns the spectrum quantification metric of the protein match of interest for the given method.

Uses of SpectrumCountingMethod in com.compomics.util.experiment.quantification.spectrumcounting

Methods in com.compomics.util.experiment.quantification.spectrumcounting that return SpectrumCountingMethod

Modifier and Type	Method	Description
static SpectrumCountingMethod	SpectrumCountingMethod.valueOf(String name)	Returns the enum constant of this type with the specified name.
static SpectrumCountingMethod[]	SpectrumCountingMethod.values()	Returns an array containing the constants of this enum type, in the order they are declared.

Uses of SpectrumCountingMethod in com.compomics.util.parameters.quantification.spectrum_counting

Methods in com.compomics.util.parameters.quantification.spectrum_counting that return SpectrumCountingMethod

Modifier and Type	Method	Description
SpectrumCountingMethod	SpectrumCountingParameters.getSelectedMethod()	Returns the current spectrum counting method.

Methods in com.compomics.util.parameters.quantification.spectrum_counting with parameters of type SpectrumCountingMethod

Modifier and Type	Method	Description
void	SpectrumCountingParameters.setSelectedMethod(SpectrumCountingMethod selectedMethod)	Set the current spectrum counting method.