Uses of Enum
com.compomics.util.experiment.quantification.spectrumcounting.SpectrumCountingMethod
Packages that use SpectrumCountingMethod
Package
Description
Classes for the generation of identification features.
Experiment classes related to spectrum counting.
Spectrum counting parameters.
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Uses of SpectrumCountingMethod in com.compomics.util.experiment.identification.features
Methods in com.compomics.util.experiment.identification.features with parameters of type SpectrumCountingMethodModifier and TypeMethodDescriptiondoubleIdentificationFeaturesGenerator.getNormalizedSpectrumCounting(long proteinMatchKey, Metrics metrics, UnitOfMeasurement unit, Double referenceMass, SpectrumCountingMethod method) Returns the spectrum quantification metric of the protein match of interest using the preference settings normalized to the injected protein amount.doubleIdentificationFeaturesGenerator.getNormalizedSpectrumCounting(long proteinMatchKey, UnitOfMeasurement unit, SpectrumCountingMethod method) Returns the spectrum quantification metric of the protein match of interest using the preference settings normalized to the injected protein amount.IdentificationFeaturesGenerator.getSpectrumCounting(long proteinMatchKey, SpectrumCountingMethod method) Returns the spectrum quantification metric of the protein match of interest for the given method. -
Uses of SpectrumCountingMethod in com.compomics.util.experiment.quantification.spectrumcounting
Methods in com.compomics.util.experiment.quantification.spectrumcounting that return SpectrumCountingMethodModifier and TypeMethodDescriptionstatic SpectrumCountingMethodReturns the enum constant of this type with the specified name.static SpectrumCountingMethod[]SpectrumCountingMethod.values()Returns an array containing the constants of this enum type, in the order they are declared. -
Uses of SpectrumCountingMethod in com.compomics.util.parameters.quantification.spectrum_counting
Methods in com.compomics.util.parameters.quantification.spectrum_counting that return SpectrumCountingMethodModifier and TypeMethodDescriptionSpectrumCountingParameters.getSelectedMethod()Returns the current spectrum counting method.Methods in com.compomics.util.parameters.quantification.spectrum_counting with parameters of type SpectrumCountingMethodModifier and TypeMethodDescriptionvoidSpectrumCountingParameters.setSelectedMethod(SpectrumCountingMethod selectedMethod) Set the current spectrum counting method.