Package com.compomics.util.general

package com.compomics.util.general

General, top-level tasks that are used throughout the other packages in the util section.

Related Packages

Package	Description
com.compomics.util	General utilities classes.
com.compomics.util.general.servlet	Servlet representation of the classes from the general utilities package (com.compomics.util.general)

Class	Description
BoxedObject<K>	Convenience class allowing the boxing of an object.
CommandLineParser	This class provides a generic interface for the parsing of command-line arguments, options and flags.
DefaultOutputLoggerImplementation	This class implements a default logger (for debugging purposes).
FileLoggerImplementation	This class implements the Logger interface for logging to a file.
IsotopicDistribution	This class calculates the isotopic distribution based on a molecular formula.
IsotopicDistributionSpectrum	This class is an implementation of the SpectrumFile specific for the isotopic distribution Created by IntelliJ IDEA.
IsotopicElement	This class represents the isotopically different element with the occurrence and the dalton difference between this and the natural variant.
MassCalc	This class takes care of mass calculation, based on a sequence in IUPAC format.
Translate	This class allows the user to translate a DNA sequence into 6 reading frames.
UnknownElementMassException	This class implements an Exception, thrown when a MassCalc instance is confronted with an element symbol it cannot retrieve in its element lists.