Uses of Interface
com.compomics.util.gui.interfaces.SpectrumAnnotation
Packages that use SpectrumAnnotation
Package
Description
Classes used for ms2 spectrum annotation.
Spectrum and Chromatogram visualization GUI classes.
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Uses of SpectrumAnnotation in com.compomics.util.experiment.identification.spectrum_annotation
Methods in com.compomics.util.experiment.identification.spectrum_annotation that return types with arguments of type SpectrumAnnotationModifier and TypeMethodDescriptionstatic Vector<SpectrumAnnotation> SpectrumAnnotator.getSpectrumAnnotation(IonMatch[] ionMatches) Translates the list of ion matches into a vector of annotations which can be read by the SpectrumPanel. -
Uses of SpectrumAnnotation in com.compomics.util.gui.spectrum
Classes in com.compomics.util.gui.spectrum that implement SpectrumAnnotationModifier and TypeClassDescriptionclassThis class provides a default implementation of the SpectrumAnnotation interface.Methods in com.compomics.util.gui.spectrum that return types with arguments of type SpectrumAnnotationModifier and TypeMethodDescriptionstatic Vector<SpectrumAnnotation> SpectrumPanel.filterAnnotations(Vector<SpectrumAnnotation> annotations, HashMap<Ion.IonType, HashSet<Integer>> iontypes, ArrayList<NeutralLoss> neutralLosses, boolean singleChargeSelected, boolean doubleChargeSelected, boolean moreThanTwoChargesSelected) Deprecated.used only in demo classesMethods in com.compomics.util.gui.spectrum with parameters of type SpectrumAnnotationModifier and TypeMethodDescriptionprotected voidGraphicsPanel.annotate(SpectrumAnnotation aSA, Graphics g, HashMap<String, Integer> aAlreadyAnnotated, boolean mirrored) This method attempts to find the specified SpectrumAnnotation in the current peak list and if so, annotates it correspondingly on the screen.Method parameters in com.compomics.util.gui.spectrum with type arguments of type SpectrumAnnotationModifier and TypeMethodDescriptionstatic Vector<SpectrumAnnotation> SpectrumPanel.filterAnnotations(Vector<SpectrumAnnotation> annotations, HashMap<Ion.IonType, HashSet<Integer>> iontypes, ArrayList<NeutralLoss> neutralLosses, boolean singleChargeSelected, boolean doubleChargeSelected, boolean moreThanTwoChargesSelected) Deprecated.used only in demo classesvoidGraphicsPanel.setAnnotations(List<SpectrumAnnotation> aAnnotations) This method sets all the annotations on this instance.voidGraphicsPanel.setAnnotations(List<SpectrumAnnotation> aAnnotations, boolean annotateHighestPeak) This method sets all the annotations on this instance.voidGraphicsPanel.setAnnotationsMirrored(List<SpectrumAnnotation> aAnnotations) This method sets all the annotations for the mirrored spectra.voidGraphicsPanel.setAnnotationsMirrored(List<SpectrumAnnotation> aAnnotations, boolean annotateHighestPeak) This method sets all the annotations for the mirrored spectra.