Package com.compomics.util.gui.spectrum

package com.compomics.util.gui.spectrum
Spectrum and Chromatogram visualization GUI classes.
  • Class
    Description
    ChromatogramPanel
    This class provides a JPanel that can display a profileChromatogram.
    DefaultSpectrumAnnotation
    This class provides a default implementation of the SpectrumAnnotation interface.
    FragmentIonTable
    Creates a fragment ion table with the detected fragment ions.
    GraphicsPanel
    This class presents a JPanel that will hold and display a mass spectrum or a chromatogram.
    GraphicsPanel.DrawingStyle
    An enumerator of the possible GraphicsPanel types.
    GraphicsPanel.GraphicsPanelType
    An enumerator of the possible GraphicsPanel types.
    IntensityHistogram
    Creates an IntensityHistogram plot.
    IonLabelColorTableModel
    A table model to use for the ion label annotation colors.
    IsotopicDistributionPanel
    This class provides a JPanel that can display a peptide isotopic distribution.
    MassErrorBubblePlot
    Creates a MassErrorBubblePlot displaying the mz values vs the mass error with the intensity as the size of the bubbles.
    MassErrorPlot
    Creates a MassErrorPlot displaying the mz values vs the mass error.
    ReferenceArea
    A reference area to be added to a GraphicsPanel.
    SequenceFragmentationPanel
    This class was imported from the Peptizer and MascotDatfile parser, and was developed to display fragmentation information on the modified sequence as inspired by X!Tandem.
    SpectrumPanel
    This class presents a JPanel that will hold and display a mass spectrum in centroid or profile mode.