Uses of Package
com.compomics.util.interfaces

Packages that use com.compomics.util.interfaces

Package	Description
com.compomics.util.general	General, top-level tasks that are used throughout the other packages in the util section.
com.compomics.util.gui	Basic GUI classes.
com.compomics.util.gui.spectrum	Spectrum and Chromatogram visualization GUI classes.
com.compomics.util.gui.utils	GUI utilities classes.
com.compomics.util.io.file	Classes related to the handling of files.
com.compomics.util.nucleotide	Useful objects for modeling and handling nucleotides.
com.compomics.util.protein	Classes concerning useful Objects and their operations for modeling and handling proteins.

Classes in com.compomics.util.interfaces used by com.compomics.util.general

Class	Description
Logger	This interface describes the behaviour for a class that can log messages.
SpectrumFile	This interface describes the behaviour for a spectrum file (ie., PKL file, Mascot Generic file, dat file, ...).

Classes in com.compomics.util.interfaces used by com.compomics.util.gui

Class	Description
Flamable	This interface describes the behaviour for classes that can handle unrecoverable errors and exceptions, thrown by child threads etc.

Classes in com.compomics.util.interfaces used by com.compomics.util.gui.spectrum

Class	Description
SpectrumFile	This interface describes the behaviour for a spectrum file (ie., PKL file, Mascot Generic file, dat file, ...).

Classes in com.compomics.util.interfaces used by com.compomics.util.gui.utils

Class	Description
Connectable	This interface describes the behaviour for classes that can accept an incoming DB connection.

Classes in com.compomics.util.interfaces used by com.compomics.util.io.file

Class	Description
Monitorable	This interface describes the behaviour for any Object whose progressing state can be monitored.

Classes in com.compomics.util.interfaces used by com.compomics.util.nucleotide

Class	Description
Sequence	This interface defines the default behavior of any kind of sequence with a certain mass - be it DNA, protein or something else.

Classes in com.compomics.util.interfaces used by com.compomics.util.protein

Class	Description
Modification	This interface describes the behaviour for a modification on a peptide or aminoacid sequence.
Sequence	This interface defines the default behavior of any kind of sequence with a certain mass - be it DNA, protein or something else.