Uses of Interface
com.compomics.util.io.export.ExportFeature

Packages that use ExportFeature

Package	Description
com.compomics.util.io.export	Classes related to exporting reports.
com.compomics.util.io.export.features	Classes related to exporting Reporter features.
com.compomics.util.io.export.features.peptideshaker	Package containing classes listing the possible export features for PeptideShaker.
com.compomics.util.io.export.features.reporter	Package containing classes listing the possible export features for Reporter.

Uses of ExportFeature in com.compomics.util.io.export

Methods in com.compomics.util.io.export that return types with arguments of type ExportFeature

Modifier and Type	Method	Description
ArrayList<ExportFeature>	ExportFactory.getExportFeatures(String sectionName, boolean includeSubFeatures)	Returns the export features implemented for the given section.
ArrayList<ExportFeature>	ExportFeature.getExportFeatures(boolean includeSubFeatures)	Returns a list of all implemented export features.
ArrayList<ExportFeature>	ExportScheme.getExportFeatures(String section)	Returns the export features to be included in the given section.

Methods in com.compomics.util.io.export with parameters of type ExportFeature

Modifier and Type	Method	Description
void	ExportScheme.addExportFeature(String section, ExportFeature exportFeature)	Adds an export feature to the desired section.

Method parameters in com.compomics.util.io.export with type arguments of type ExportFeature

Modifier and Type	Method	Description
void	ExportScheme.setExportFeatures(String section, ArrayList<ExportFeature> exportFeatures)	Sets the export features of a given section.

Constructor parameters in com.compomics.util.io.export with type arguments of type ExportFeature

Modifier	Constructor	Description
	ExportScheme(String name, boolean editable, ArrayList<String> sectionList, HashMap<String,ArrayList<ExportFeature>> exportFeatures, String separator, boolean indexes, boolean header, int separationLines, boolean includeSectionTitles, boolean validatedOnly, boolean includeDecoys)	Constructor.
	ExportScheme(String name, boolean editable, HashMap<String,ArrayList<ExportFeature>> exportFeatures, String separator, boolean indexes, boolean header, int separationLines, boolean includeSectionTitles, boolean validatedOnly, boolean includeDecoys)	Constructor.
	ExportScheme(String name, boolean editable, HashMap<String,ArrayList<ExportFeature>> exportFeatures, String separator, boolean indexes, boolean header, int separationLines, boolean includeSectionTitles, boolean validatedOnly, boolean includeDecoys, String mainTitle)	Constructor.

Uses of ExportFeature in com.compomics.util.io.export.features

Subinterfaces of ExportFeature in com.compomics.util.io.export.features

Modifier and Type	Interface	Description
interface	ReporterExportFeature	Reporter extension of the utilities export features.

Uses of ExportFeature in com.compomics.util.io.export.features.peptideshaker

Classes in com.compomics.util.io.export.features.peptideshaker that implement ExportFeature

Modifier and Type	Class	Description
enum	PsAnnotationFeature	This class lists the annotation export features.
enum	PsFragmentFeature	This class lists the fragment identification features.
enum	PsIdentificationAlgorithmMatchesFeature	This class lists the Algorithm identification features.
enum	PsInputFilterFeature	This enum lists the export features related to the import features.
enum	PsPeptideFeature	This class lists the peptide identification features.
enum	PsProjectFeature	This class lists the PSM identification features.
enum	PsProteinFeature	This class lists the protein identification features.
enum	PsPsmFeature	This class lists the PSM identification features.
enum	PsPtmScoringFeature	This enum groups the export features related to PTM scoring.
enum	PsSearchFeature	This class lists the export features linked to the spectrum identification.
enum	PsSpectrumCountingFeature	This class lists all the export features related to the spectrum counting.
enum	PsValidationFeature	This enum lists the export features linked to the validation process.

Methods in com.compomics.util.io.export.features.peptideshaker that return types with arguments of type ExportFeature

Modifier and Type	Method	Description
ArrayList<ExportFeature>	PsAnnotationFeature.getExportFeatures(boolean includeSubFeatures)
ArrayList<ExportFeature>	PsFragmentFeature.getExportFeatures(boolean includeSubFeatures)
ArrayList<ExportFeature>	PsIdentificationAlgorithmMatchesFeature.getExportFeatures(boolean includeSubFeatures)
ArrayList<ExportFeature>	PsInputFilterFeature.getExportFeatures(boolean includeSubFeatures)
ArrayList<ExportFeature>	PsPeptideFeature.getExportFeatures(boolean includeSubFeatures)
ArrayList<ExportFeature>	PsProjectFeature.getExportFeatures(boolean includeSubFeatures)
ArrayList<ExportFeature>	PsProteinFeature.getExportFeatures(boolean includeSubFeatures)
ArrayList<ExportFeature>	PsPsmFeature.getExportFeatures(boolean includeSubFeatures)
ArrayList<ExportFeature>	PsPtmScoringFeature.getExportFeatures(boolean includeSubFeatures)
ArrayList<ExportFeature>	PsSearchFeature.getExportFeatures(boolean includeSubFeatures)
ArrayList<ExportFeature>	PsSpectrumCountingFeature.getExportFeatures(boolean includeSubFeatures)
ArrayList<ExportFeature>	PsValidationFeature.getExportFeatures(boolean includeSubFeatures)

Uses of ExportFeature in com.compomics.util.io.export.features.reporter

Classes in com.compomics.util.io.export.features.reporter that implement ExportFeature

Modifier and Type	Class	Description
enum	ReporterPeptideFeature	This enum lists all the peptide export features available from reporter complementarily to the ones available in PeptideShaker.
enum	ReporterProteinFeatures	This enum lists all the protein export features available from reporter complementarily to the ones available in PeptideShaker.
enum	ReporterPsmFeatures	This enum lists all the PSM export features available from reporter complementarily to the ones available in PeptideShaker.

Methods in com.compomics.util.io.export.features.reporter that return types with arguments of type ExportFeature

Modifier and Type	Method	Description
ArrayList<ExportFeature>	ReporterPeptideFeature.getExportFeatures(boolean includeSubFeatures)
ArrayList<ExportFeature>	ReporterProteinFeatures.getExportFeatures(boolean includeSubFeatures)
ArrayList<ExportFeature>	ReporterPsmFeatures.getExportFeatures(boolean includeSubFeatures)