Enum PsIdentificationAlgorithmMatchesFeature
java.lang.Object
java.lang.Enum<PsIdentificationAlgorithmMatchesFeature>
com.compomics.util.io.export.features.peptideshaker.PsIdentificationAlgorithmMatchesFeature
- All Implemented Interfaces:
ExportFeature,Serializable,Comparable<PsIdentificationAlgorithmMatchesFeature>,java.lang.constant.Constable
public enum PsIdentificationAlgorithmMatchesFeature
extends Enum<PsIdentificationAlgorithmMatchesFeature>
implements ExportFeature
This class lists the Algorithm identification features.
- Author:
- Marc Vaudel, Harald Barsnes
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Nested Class Summary
Nested classes/interfaces inherited from class java.lang.Enum
Enum.EnumDesc<E extends Enum<E>> -
Enum Constant Summary
Enum ConstantsEnum ConstantDescription -
Field Summary
FieldsModifier and TypeFieldDescriptionThe description of the feature.The title of the feature which will be used for column heading.static final StringThe type of export feature.Fields inherited from interface com.compomics.util.io.export.ExportFeature
serialVersionUID -
Method Summary
Modifier and TypeMethodDescriptionReturns the description of the feature.getExportFeatures(boolean includeSubFeatures) Returns a list of all implemented export features.Returns the family type of this export feature.getTitle()Returns the column title of the feature.booleanIndicates whether a feature is for advanced user only.Returns the enum constant of this type with the specified name.values()Returns an array containing the constants of this enum type, in the order they are declared.
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Enum Constant Details
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rank
@SerializedName("PsIdentificationAlgorithmMatchesFeature.rank") public static final PsIdentificationAlgorithmMatchesFeature rank -
accessions
@SerializedName("PsIdentificationAlgorithmMatchesFeature.accessions") public static final PsIdentificationAlgorithmMatchesFeature accessions -
protein_description
@SerializedName("PsIdentificationAlgorithmMatchesFeature.protein_description") public static final PsIdentificationAlgorithmMatchesFeature protein_description -
sequence
@SerializedName("PsIdentificationAlgorithmMatchesFeature.sequence") public static final PsIdentificationAlgorithmMatchesFeature sequence -
aaBefore
@SerializedName("PsIdentificationAlgorithmMatchesFeature.aaBefore") public static final PsIdentificationAlgorithmMatchesFeature aaBefore -
aaAfter
@SerializedName("PsIdentificationAlgorithmMatchesFeature.aaAfter") public static final PsIdentificationAlgorithmMatchesFeature aaAfter -
position
@SerializedName("PsIdentificationAlgorithmMatchesFeature.position") public static final PsIdentificationAlgorithmMatchesFeature position -
missed_cleavages
@SerializedName("PsIdentificationAlgorithmMatchesFeature.missed_cleavages") public static final PsIdentificationAlgorithmMatchesFeature missed_cleavages -
modified_sequence
@SerializedName("PsIdentificationAlgorithmMatchesFeature.modified_sequence") public static final PsIdentificationAlgorithmMatchesFeature modified_sequence -
variable_ptms
@SerializedName("PsIdentificationAlgorithmMatchesFeature.variable_ptms") public static final PsIdentificationAlgorithmMatchesFeature variable_ptms -
fixed_ptms
@SerializedName("PsIdentificationAlgorithmMatchesFeature.fixed_ptms") public static final PsIdentificationAlgorithmMatchesFeature fixed_ptms -
spectrum_file
@SerializedName("PsIdentificationAlgorithmMatchesFeature.spectrum_file") public static final PsIdentificationAlgorithmMatchesFeature spectrum_file -
spectrum_title
@SerializedName("PsIdentificationAlgorithmMatchesFeature.spectrum_title") public static final PsIdentificationAlgorithmMatchesFeature spectrum_title -
spectrum_scan_number
@SerializedName("PsIdentificationAlgorithmMatchesFeature.spectrum_scan_number") public static final PsIdentificationAlgorithmMatchesFeature spectrum_scan_number -
spectrum_array_list
@SerializedName("PsIdentificationAlgorithmMatchesFeature.spectrum_array_list") public static final PsIdentificationAlgorithmMatchesFeature spectrum_array_list -
rt
@SerializedName("PsIdentificationAlgorithmMatchesFeature.rt") public static final PsIdentificationAlgorithmMatchesFeature rt -
mz
@SerializedName("PsIdentificationAlgorithmMatchesFeature.mz") public static final PsIdentificationAlgorithmMatchesFeature mz -
spectrum_charge
@SerializedName("PsIdentificationAlgorithmMatchesFeature.spectrum_charge") public static final PsIdentificationAlgorithmMatchesFeature spectrum_charge -
precursor_intensity
@SerializedName("PsIdentificationAlgorithmMatchesFeature.precursor_intensity") public static final PsIdentificationAlgorithmMatchesFeature precursor_intensity -
total_spectrum_intensity
@SerializedName("PsIdentificationAlgorithmMatchesFeature.total_spectrum_intensity.") public static final PsIdentificationAlgorithmMatchesFeature total_spectrum_intensity -
intensity_coverage
@SerializedName("PsIdentificationAlgorithmMatchesFeature.intensity_coverage") public static final PsIdentificationAlgorithmMatchesFeature intensity_coverage -
max_intensity
@SerializedName("PsIdentificationAlgorithmMatchesFeature.max_intensity") public static final PsIdentificationAlgorithmMatchesFeature max_intensity -
identification_charge
@SerializedName("PsIdentificationAlgorithmMatchesFeature.identification_charge") public static final PsIdentificationAlgorithmMatchesFeature identification_charge -
theoretical_mass
@SerializedName("PsIdentificationAlgorithmMatchesFeature.theoretical_mass") public static final PsIdentificationAlgorithmMatchesFeature theoretical_mass -
isotope
@SerializedName("PsIdentificationAlgorithmMatchesFeature.isotope") public static final PsIdentificationAlgorithmMatchesFeature isotope -
mz_error_ppm
@SerializedName("PsIdentificationAlgorithmMatchesFeature.mz_error_ppm") public static final PsIdentificationAlgorithmMatchesFeature mz_error_ppm -
mz_error_da
@SerializedName("PsIdentificationAlgorithmMatchesFeature.mz_error_da") public static final PsIdentificationAlgorithmMatchesFeature mz_error_da -
algorithm_score
@SerializedName("PsIdentificationAlgorithmMatchesFeature.algorithm_score") public static final PsIdentificationAlgorithmMatchesFeature algorithm_score -
algorithm_raw_score
@SerializedName("PsIdentificationAlgorithmMatchesFeature.algorithm_raw_score") public static final PsIdentificationAlgorithmMatchesFeature algorithm_raw_score -
algorithm_confidence
@SerializedName("PsIdentificationAlgorithmMatchesFeature.algorithm_confidence") public static final PsIdentificationAlgorithmMatchesFeature algorithm_confidence -
algorithm_delta_confidence
@SerializedName("PsIdentificationAlgorithmMatchesFeature.algorithm_delta_confidence") public static final PsIdentificationAlgorithmMatchesFeature algorithm_delta_confidence -
delta_confidence
@SerializedName("PsIdentificationAlgorithmMatchesFeature.delta_confidence") public static final PsIdentificationAlgorithmMatchesFeature delta_confidence -
fragment_mz_accuracy_score
@SerializedName("PsIdentificationAlgorithmMatchesFeature.fragment_mz_accuracy_score") public static final PsIdentificationAlgorithmMatchesFeature fragment_mz_accuracy_score -
intensity_score
@SerializedName("PsIdentificationAlgorithmMatchesFeature.intensity_score") public static final PsIdentificationAlgorithmMatchesFeature intensity_score -
sequence_coverage
@SerializedName("PsIdentificationAlgorithmMatchesFeature.sequence_coverage") public static final PsIdentificationAlgorithmMatchesFeature sequence_coverage -
longest_amino_acid_sequence_annotated
@SerializedName("PsIdentificationAlgorithmMatchesFeature.longest_amino_acid_sequence_annotated") public static final PsIdentificationAlgorithmMatchesFeature longest_amino_acid_sequence_annotated -
longest_amino_acid_sequence_annotated_single_serie
@SerializedName("PsIdentificationAlgorithmMatchesFeature.longest_amino_acid_sequence_annotated_single_serie") public static final PsIdentificationAlgorithmMatchesFeature longest_amino_acid_sequence_annotated_single_serie -
amino_acids_annotated
@SerializedName("PsIdentificationAlgorithmMatchesFeature.amino_acids_annotated") public static final PsIdentificationAlgorithmMatchesFeature amino_acids_annotated -
decoy
@SerializedName("PsIdentificationAlgorithmMatchesFeature.decoy") public static final PsIdentificationAlgorithmMatchesFeature decoy -
validated
@SerializedName("PsIdentificationAlgorithmMatchesFeature.validated") public static final PsIdentificationAlgorithmMatchesFeature validated -
starred
@SerializedName("PsIdentificationAlgorithmMatchesFeature.starred") public static final PsIdentificationAlgorithmMatchesFeature starred
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Field Details
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title
The title of the feature which will be used for column heading. -
description
The description of the feature. -
type
The type of export feature.- See Also:
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Method Details
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values
Returns an array containing the constants of this enum type, in the order they are declared.- Returns:
- an array containing the constants of this enum type, in the order they are declared
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valueOf
Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)- Parameters:
name- the name of the enum constant to be returned.- Returns:
- the enum constant with the specified name
- Throws:
IllegalArgumentException- if this enum type has no constant with the specified nameNullPointerException- if the argument is null
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getExportFeatures
Description copied from interface:ExportFeatureReturns a list of all implemented export features.- Specified by:
getExportFeaturesin interfaceExportFeature- Parameters:
includeSubFeatures- boolean indicating whether sub features should be included- Returns:
- a list of all implemented export features
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getTitle
Description copied from interface:ExportFeatureReturns the column title of the feature.- Specified by:
getTitlein interfaceExportFeature- Returns:
- the column title of the feature
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getDescription
Description copied from interface:ExportFeatureReturns the description of the feature.- Specified by:
getDescriptionin interfaceExportFeature- Returns:
- the description of the feature
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getFeatureFamily
Description copied from interface:ExportFeatureReturns the family type of this export feature.- Specified by:
getFeatureFamilyin interfaceExportFeature- Returns:
- the family type of this export feature
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isAdvanced
public boolean isAdvanced()Description copied from interface:ExportFeatureIndicates whether a feature is for advanced user only.- Specified by:
isAdvancedin interfaceExportFeature- Returns:
- a boolean indicating whether a feature is for advanced user only
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