Package com.compomics.util.io.export.features.peptideshaker

Enum PsPsmFeature

java.lang.Object
java.lang.Enum<PsPsmFeature>
com.compomics.util.io.export.features.peptideshaker.PsPsmFeature
All Implemented Interfaces:
ExportFeature, Serializable, Comparable<PsPsmFeature>, java.lang.constant.Constable
public enum PsPsmFeature extends Enum<PsPsmFeature> implements ExportFeature
This class lists the PSM identification features.
Author:
Marc Vaudel, Harald Barsnes

  • Enum Constant Details

    • starred

      @SerializedName("PsPsmFeature.starred") public static final PsPsmFeature starred

    • id

      @SerializedName("PsPsmFeature.id") public static final PsPsmFeature id

    • protein_groups

      @SerializedName("PsPsmFeature.protein_groups") public static final PsPsmFeature protein_groups

    • best_protein_group_validation

      @SerializedName("PsPsmFeature.best_protein_group_validation") public static final PsPsmFeature best_protein_group_validation

    • localization_confidence

      @SerializedName("PsPsmFeature.localization_confidence") public static final PsPsmFeature localization_confidence

    • probabilistic_score

      @SerializedName("PsPsmFeature.probabilistic_score") public static final PsPsmFeature probabilistic_score

    • d_score

      @SerializedName("PsPsmFeature.d_score") public static final PsPsmFeature d_score

    • confident_modification_sites

      @SerializedName("PsPsmFeature.confident_modification_sites") public static final PsPsmFeature confident_modification_sites

    • confident_modification_sites_number

      @SerializedName("PsPsmFeature.confident_modification_sites_number") public static final PsPsmFeature confident_modification_sites_number

    • ambiguous_modification_sites

      @SerializedName("PsPsmFeature.ambiguous_modification_sites") public static final PsPsmFeature ambiguous_modification_sites

    • ambiguous_modification_sites_number

      @SerializedName("PsPsmFeature.ambiguous_modification_sites_number") public static final PsPsmFeature ambiguous_modification_sites_number

    • confident_phosphosites

      @SerializedName("PsPsmFeature.confident_phosphosites") public static final PsPsmFeature confident_phosphosites

    • confident_phosphosites_number

      @SerializedName("PsPsmFeature.confident_phosphosites_number") public static final PsPsmFeature confident_phosphosites_number

    • ambiguous_phosphosites

      @SerializedName("PsPsmFeature.ambiguous_phosphosites") public static final PsPsmFeature ambiguous_phosphosites

    • ambiguous_phosphosites_number

      @SerializedName("PsPsmFeature.ambiguous_phosphosites_number") public static final PsPsmFeature ambiguous_phosphosites_number

    • algorithm_score

      @SerializedName("PsPsmFeature.algorithm_score") public static final PsPsmFeature algorithm_score

    • raw_score

      @SerializedName("PsPsmFeature.raw_score") public static final PsPsmFeature raw_score

    • score

      @SerializedName("PsPsmFeature.score") public static final PsPsmFeature score

    • confidence

      @SerializedName("PsPsmFeature.confidence") public static final PsPsmFeature confidence

    • validated

      @SerializedName("PsPsmFeature.validated") public static final PsPsmFeature validated

    • hidden

      @SerializedName("PsPsmFeature.starred") public static final PsPsmFeature hidden

  • Field Details

    • title

      public String title
      The title of the feature which will be used for column heading.

    • description

      public String description
      The description of the feature.

    • type

      public static final String type
      The type of export feature.
      See Also:

  • Method Details

    • values

      public static PsPsmFeature[] values()
      Returns an array containing the constants of this enum type, in the order they are declared.
      Returns:
      an array containing the constants of this enum type, in the order they are declared

    • valueOf

      public static PsPsmFeature valueOf(String name)
      Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)
      Parameters:
      name - the name of the enum constant to be returned.
      Returns:
      the enum constant with the specified name
      Throws:
      IllegalArgumentException - if this enum type has no constant with the specified name
      NullPointerException - if the argument is null

    • getExportFeatures

      public ArrayList<ExportFeature> getExportFeatures(boolean includeSubFeatures)
      Description copied from interface: ExportFeature
      Returns a list of all implemented export features.
      Specified by:
      getExportFeatures in interface ExportFeature
      Parameters:
      includeSubFeatures - boolean indicating whether sub features should be included
      Returns:
      a list of all implemented export features

    • getTitle

      public String getTitle()
      Description copied from interface: ExportFeature
      Returns the column title of the feature.
      Specified by:
      getTitle in interface ExportFeature
      Returns:
      the column title of the feature

    • getDescription

      public String getDescription()
      Description copied from interface: ExportFeature
      Returns the description of the feature.
      Specified by:
      getDescription in interface ExportFeature
      Returns:
      the description of the feature

    • getFeatureFamily

      public String getFeatureFamily()
      Description copied from interface: ExportFeature
      Returns the family type of this export feature.
      Specified by:
      getFeatureFamily in interface ExportFeature
      Returns:
      the family type of this export feature

    • isAdvanced

      public boolean isAdvanced()
      Description copied from interface: ExportFeature
      Indicates whether a feature is for advanced user only.
      Specified by:
      isAdvanced in interface ExportFeature
      Returns:
      a boolean indicating whether a feature is for advanced user only