Package com.compomics.util.io.json.marshallers

Class PrideMarshaller

java.lang.Object
com.compomics.util.experiment.personalization.ExperimentObject
com.compomics.util.io.json.JsonMarshaller
com.compomics.util.io.json.marshallers.PrideMarshaller
All Implemented Interfaces:
Serializable
public class PrideMarshaller extends JsonMarshaller
A json marshaller for use with the PRIDE webservice.
Author:
Kenneth Verheggen
See Also:

  • Constructor Details

    • PrideMarshaller

      public PrideMarshaller()
      Create a PRIDE marshaller.

  • Method Details

    • init

      protected void init()
      Description copied from class: JsonMarshaller
      Initializes the marshaller with (custom) type adapters.
      Overrides:
      init in class JsonMarshaller

    • getProjectDetail

      public uk.ac.ebi.pride.archive.web.service.model.project.ProjectDetail getProjectDetail(String jsonURL) throws IOException
      Convert from JSON to a list of ProjectDetails.
      Parameters:
      jsonURL - the URL for the JSON object
      Returns:
      an instance of the objectType containing the JSON information
      Throws:
      IOException - thrown if the webservice is down or the json response was invalid

    • getProjectSummaryList

      public uk.ac.ebi.pride.archive.web.service.model.project.ProjectSummaryList getProjectSummaryList(String jsonURL) throws IOException
      Convert from JSON to a list of ProjectDetails.
      Parameters:
      jsonURL - the URL for the JSON object
      Returns:
      an instance of the objectType containing the JSON information
      Throws:
      IOException - thrown if the webservice is down or the json response was invalid

    • getAssayDetailList

      public uk.ac.ebi.pride.archive.web.service.model.assay.AssayDetailList getAssayDetailList(String jsonURL) throws IOException
      Convert from JSON to a list of AssaytDetails.
      Parameters:
      jsonURL - the URL for the JSON object
      Returns:
      an instance of the objectType containing the JSON information
      Throws:
      IOException - thrown if the webservice is down or the json response was invalid

    • getFileDetailList

      public uk.ac.ebi.pride.archive.web.service.model.file.FileDetailList getFileDetailList(String jsonURL) throws IOException
      Convert from JSON to a list of FileDetails.
      Parameters:
      jsonURL - the URL for the JSON object
      Returns:
      an instance of the objectType containing the JSON information
      Throws:
      IOException - thrown if the webservice is down or the json response was invalid

    • getProteinDetailList

      public uk.ac.ebi.pride.archive.web.service.model.protein.ProteinDetailList getProteinDetailList(String jsonURL) throws IOException
      Convert from JSON to a list of ProteinDetails.
      Parameters:
      jsonURL - the URL for the JSON object
      Returns:
      an instance of the objectType containing the JSON information
      Throws:
      IOException - thrown if the webservice is down or the json response was invalid

    • getPeptideDetailList

      public uk.ac.ebi.pride.archive.web.service.model.peptide.PsmDetailList getPeptideDetailList(String jsonURL) throws IOException
      Convert from JSON to a list of ProteinDetails.
      Parameters:
      jsonURL - the URL for the JSON object
      Returns:
      an instance of the objectType containing the JSON information
      Throws:
      IOException - thrown if the webservice is down or the json response was invalid