Package com.compomics.util.parameters.identification.advanced

Class FractionParameters

java.lang.Object

com.compomics.util.experiment.personalization.ExperimentObject

com.compomics.util.parameters.identification.advanced.FractionParameters

All Implemented Interfaces:

Serializable

public class FractionParameters
extends ExperimentObject

Settings for the handling of fractions.

Author:

Marc Vaudel, Harald Barsnes

See Also:

• Serialized Form

Field Summary

Fields inherited from class com.compomics.util.experiment.personalization.ExperimentObject

NO_KEY

Constructor Summary

Constructors

Constructor	Description
FractionParameters()	Constructor.

Method Summary

Modifier and Type	Method	Description
HashMap<String,no.uib.jsparklines.data.XYDataPoint>	getFractionMolecularWeightRanges()	Returns the user provided molecular weight ranges for the fractions.
Double	getProteinConfidenceMwPlots()	Returns the protein confidence for inclusion in MW plots.
String	getShortDescription()	Returns a short description of the parameters.
boolean	isSameAs(FractionParameters fractionSettings)	Returns a boolean indicating whether other given settings are the same as these.
void	setFractionMolecularWeightRanges(HashMap<String,no.uib.jsparklines.data.XYDataPoint> fractionMolecularWeightRanges)	Set the user provided molecular weight ranges for the fractions.
void	setProteinConfidenceMwPlots(Double proteinConfidenceMwPlots)	Sets the protein confidence for inclusion in MW plots.

Methods inherited from class com.compomics.util.experiment.personalization.ExperimentObject

addUrParam, asLong, clearParametersMap, getId, getUrParam, getUrParams, removeUrParam, setId, setUrParams

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

FractionParameters

public FractionParameters()

Constructor.

Method Details

getProteinConfidenceMwPlots

public Double getProteinConfidenceMwPlots()

Returns the protein confidence for inclusion in MW plots.

Returns:

the protein confidence for inclusion in MW plots

setProteinConfidenceMwPlots

public void setProteinConfidenceMwPlots(Double proteinConfidenceMwPlots)

Sets the protein confidence for inclusion in MW plots.

Parameters:

proteinConfidenceMwPlots - the protein confidence for inclusion in MW plots

isSameAs

public boolean isSameAs(FractionParameters fractionSettings)

Returns a boolean indicating whether other given settings are the same as these.

Parameters:

fractionSettings - other settings to compare to

Returns:

a boolean indicating whether other given settings are the same as these

getFractionMolecularWeightRanges

public HashMap<String,no.uib.jsparklines.data.XYDataPoint> getFractionMolecularWeightRanges()

Returns the user provided molecular weight ranges for the fractions. The key is the fraction file path.

Returns:

the user provided molecular weight ranges of the fractions

setFractionMolecularWeightRanges

public void setFractionMolecularWeightRanges(HashMap<String,no.uib.jsparklines.data.XYDataPoint> fractionMolecularWeightRanges)

Set the user provided molecular weight ranges for the fractions. The key is the fraction file name.

Parameters:

fractionMolecularWeightRanges - the fractionMolecularWeightRanges to set

getShortDescription

public String getShortDescription()

Returns a short description of the parameters.

Returns:

a short description of the parameters