Package com.compomics.util.parameters.identification.advanced

package com.compomics.util.parameters.identification.advanced

Advanced Identification parameters.

Related Packages

Package	Description
com.compomics.util.parameters.identification	Identification parameters.
com.compomics.util.parameters.identification.search	Identification parameters relative to the search.
com.compomics.util.parameters.identification.tool_specific	Parameters settings for the search algorithms.

Class	Description
FractionParameters	Settings for the handling of fractions.
GeneParameters	Contains methods for downloading gene and GO mappings.
IdMatchValidationParameters	Generic class grouping the identification matches validation preferences.
ModificationLocalizationParameters	This class contains the modification localization preferences.
PeptideVariantsParameters	Preferences for the allowed variants in peptide sequences.
PeptideVariantsParameters.VariantType	Enum indicating all three variant types
ProteinInferenceParameters	Generic class grouping the protein inference preferences.
PsmScoringParameters	Generic class for peptide spectrum match scoring.
SequenceMatchingParameters	The sequence matching options.
SequenceMatchingParameters.MatchingType	The different types of amino acid matching.
ValidationQcParameters	This class lists the criteria used for quality control of the validated matches.