Uses of Class
com.compomics.util.parameters.identification.tool_specific.PepnovoParameters
Packages that use PepnovoParameters
Package
Description
Experiment classes related to reading search engine files.
Search algorithm settings dialogs.
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Uses of PepnovoParameters in com.compomics.util.experiment.io.identification.idfilereaders
Methods in com.compomics.util.experiment.io.identification.idfilereaders with parameters of type PepnovoParametersModifier and TypeMethodDescriptionstatic StringPepNovoIdfileReader.getPTM(PepnovoParameters pepnovoParameters, String pepNovoModification) Get a PTM. -
Uses of PepnovoParameters in com.compomics.util.gui.parameters.identification.algorithm
Methods in com.compomics.util.gui.parameters.identification.algorithm that return PepnovoParametersModifier and TypeMethodDescriptionPepNovoParametersDialog.getInput()Returns the PepNovo+ parameters as set by the user.Constructors in com.compomics.util.gui.parameters.identification.algorithm with parameters of type PepnovoParametersModifierConstructorDescriptionPepNovoParametersDialog(Dialog owner, Frame parent, PepnovoParameters pepnovoParameters, boolean editable) Creates a new PepNovoSettingsDialog with a dialog as owner.PepNovoParametersDialog(Frame parent, PepnovoParameters pepNovoParameters, boolean editable) Creates a new PepNovoSettingsDialog with a frame as owner.