Uses of Class
com.compomics.util.parameters.identification.tool_specific.PepnovoParameters

Packages that use PepnovoParameters

Package	Description
com.compomics.util.experiment.io.identification.idfilereaders	Experiment classes related to reading search engine files.
com.compomics.util.gui.parameters.identification.algorithm	Search algorithm settings dialogs.

Uses of PepnovoParameters in com.compomics.util.experiment.io.identification.idfilereaders

Methods in com.compomics.util.experiment.io.identification.idfilereaders with parameters of type PepnovoParameters

Modifier and Type	Method	Description
static String	PepNovoIdfileReader.getPTM(PepnovoParameters pepnovoParameters, String pepNovoModification)	Get a PTM.

Uses of PepnovoParameters in com.compomics.util.gui.parameters.identification.algorithm

Methods in com.compomics.util.gui.parameters.identification.algorithm that return PepnovoParameters

Modifier and Type	Method	Description
PepnovoParameters	PepNovoParametersDialog.getInput()	Returns the PepNovo+ parameters as set by the user.

Constructors in com.compomics.util.gui.parameters.identification.algorithm with parameters of type PepnovoParameters

Modifier	Constructor	Description
	PepNovoParametersDialog(Dialog owner, Frame parent, PepnovoParameters pepnovoParameters, boolean editable)	Creates a new PepNovoSettingsDialog with a dialog as owner.
	PepNovoParametersDialog(Frame parent, PepnovoParameters pepNovoParameters, boolean editable)	Creates a new PepNovoSettingsDialog with a frame as owner.