Package com.compomics.util.parameters.identification.tool_specific

package com.compomics.util.parameters.identification.tool_specific

Parameters settings for the search algorithms.

Related Packages

Package	Description
com.compomics.util.parameters.identification	Identification parameters.
com.compomics.util.parameters.identification.advanced	Advanced Identification parameters.
com.compomics.util.parameters.identification.search	Identification parameters relative to the search.

Class	Description
AndromedaParameters	The Andromeda specific parameters.
AndromedaParameters.AndromedaDecoyMode	The available decoy modes.
CometParameters	The Comet specific parameters.
CometParameters.CometOutputFormat	The available output formats.
DirecTagParameters	The DirecTag specific parameters.
MetaMorpheusParameters	The MetaMorpheus specific parameters.
MetaMorpheusParameters.MetaMorpheusDecoyType	The available decoy types.
MetaMorpheusParameters.MetaMorpheusDissociationType	The available dissociation types.
MetaMorpheusParameters.MetaMorpheusFragmentationTerminusType	The available fragmentation terminus types.
MetaMorpheusParameters.MetaMorpheusInitiatorMethionineBehaviorType	The available initiator methionine behavior types.
MetaMorpheusParameters.MetaMorpheusMassDiffAcceptorType	The available mass difference acceptor types.
MetaMorpheusParameters.MetaMorpheusSearchType	The available search types.
MetaMorpheusParameters.MetaMorpheusToleranceType	The available decoy types.
MsAmandaParameters	The MS Amanda specific parameters.
MsgfParameters	The MS-GF+ specific parameters.
MyriMatchParameters	The MyriMatch specific parameters.
NovorParameters	Novor specific parameters.
OmssaParameters	The OMSSA specific parameters.
PepnovoParameters	PepNovo specific parameters.
PNovoParameters	pNovo specific parameters.
SageParameters	The Sage specific parameters.
TideParameters	The Tide specific parameters.
XtandemParameters	The X!Tandem specific parameters.