Uses of Package
com.compomics.util.parameters.identification.tool_specific

Packages that use com.compomics.util.parameters.identification.tool_specific

Package	Description
com.compomics.util.experiment.io.identification.idfilereaders	Experiment classes related to reading search engine files.
com.compomics.util.gui.parameters.identification.algorithm	Search algorithm settings dialogs.
com.compomics.util.parameters.identification.tool_specific	Parameters settings for the search algorithms.

Classes in com.compomics.util.parameters.identification.tool_specific used by com.compomics.util.experiment.io.identification.idfilereaders

Class	Description
PepnovoParameters	PepNovo specific parameters.

Classes in com.compomics.util.parameters.identification.tool_specific used by com.compomics.util.gui.parameters.identification.algorithm

Class	Description
AndromedaParameters	The Andromeda specific parameters.
CometParameters	The Comet specific parameters.
DirecTagParameters	The DirecTag specific parameters.
MetaMorpheusParameters	The MetaMorpheus specific parameters.
MsAmandaParameters	The MS Amanda specific parameters.
MsgfParameters	The MS-GF+ specific parameters.
MyriMatchParameters	The MyriMatch specific parameters.
NovorParameters	Novor specific parameters.
OmssaParameters	The OMSSA specific parameters.
PepnovoParameters	PepNovo specific parameters.
PNovoParameters	pNovo specific parameters.
SageParameters	The Sage specific parameters.
TideParameters	The Tide specific parameters.
XtandemParameters	The X!Tandem specific parameters.

Classes in com.compomics.util.parameters.identification.tool_specific used by com.compomics.util.parameters.identification.tool_specific

Class	Description
AndromedaParameters.AndromedaDecoyMode	The available decoy modes.
CometParameters.CometOutputFormat	The available output formats.
MetaMorpheusParameters.MetaMorpheusDecoyType	The available decoy types.
MetaMorpheusParameters.MetaMorpheusDissociationType	The available dissociation types.
MetaMorpheusParameters.MetaMorpheusFragmentationTerminusType	The available fragmentation terminus types.
MetaMorpheusParameters.MetaMorpheusInitiatorMethionineBehaviorType	The available initiator methionine behavior types.
MetaMorpheusParameters.MetaMorpheusMassDiffAcceptorType	The available mass difference acceptor types.
MetaMorpheusParameters.MetaMorpheusSearchType	The available search types.
MetaMorpheusParameters.MetaMorpheusToleranceType	The available decoy types.