Package com.compomics.util.pdbfinder

Class FindPdbForUniprotAccessions

java.lang.Object

com.compomics.util.pdbfinder.FindPdbForUniprotAccessions

public class FindPdbForUniprotAccessions
extends Object

Maps UniProt protein accession numbers to PDB file IDs.

Author:

Niklaas Colaert, Yehia Farag

Constructor Summary

Constructors

Constructor	Description
FindPdbForUniprotAccessions()	Empty default constructor
FindPdbForUniprotAccessions(String aProteinAccession, WaitingHandler aWaitingHandler)	Constructor.

Method Summary

Modifier and Type	Method	Description
Vector<PdbParameter>	getPdbs()	Returns a vector of the PDB files mapped to the given protein accession number.
static void	main(String[] args)	Main method.
boolean	urlWasRead()	Returns true if the PDB URL was read, false otherwise.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

FindPdbForUniprotAccessions

public FindPdbForUniprotAccessions()

Empty default constructor

FindPdbForUniprotAccessions

public FindPdbForUniprotAccessions(String aProteinAccession,
 WaitingHandler aWaitingHandler)

Constructor.

Parameters:

aProteinAccession - the protein accession

aWaitingHandler - a waiting handler

Method Details

urlWasRead

public boolean urlWasRead()

Returns true if the PDB URL was read, false otherwise.

Returns:

true if the PDB URL was read, false otherwise

getPdbs

public Vector<PdbParameter> getPdbs()

Returns a vector of the PDB files mapped to the given protein accession number.

Returns:

a vector of the PDB files

main

public static void main(String[] args)

Main method. Used for testing purposes.

Parameters:

args - the arguments