Package com.compomics.util.pdbfinder.das.readers

Class AlignmentBlock

java.lang.Object

com.compomics.util.pdbfinder.das.readers.AlignmentBlock

public class AlignmentBlock
extends Object

AlignmentBlock.

Author:

Niklaas Colaert

Constructor Summary

Constructors

Constructor	Description
AlignmentBlock()	Empty default constructor
AlignmentBlock(int aPdbStart, int aPdbEnd, int aSpStart, int aSpEnd, String aPdbAccession, String aSpAccession)	Constructor.

Method Summary

Modifier and Type	Method	Description
int	getDifference()	Returns the difference.
String	getPdbAccession()	Returns the PDB accession.
int	getPdbEnd()	Returns the PDB end.
int	getPdbStart()	Returns the PDB start.
String	getSpAccession()	Returns the SP accession.
int	getSpEnd()	Returns the SP end.
int	getSpStart()	Returns the SP start.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

AlignmentBlock

public AlignmentBlock()

Empty default constructor

AlignmentBlock

public AlignmentBlock(int aPdbStart,
 int aPdbEnd,
 int aSpStart,
 int aSpEnd,
 String aPdbAccession,
 String aSpAccession)

Constructor.

Parameters:

aPdbStart - the PDB start index

aPdbEnd - the PDB end index

aSpStart - the UniProt start index

aSpEnd - the UniProt end index

aPdbAccession - the PDB accession

aSpAccession - the UniProt accession

Method Details

getPdbStart

public int getPdbStart()

Returns the PDB start.

Returns:

the PDB start

getPdbEnd

public int getPdbEnd()

Returns the PDB end.

Returns:

the PDB end

getSpStart

public int getSpStart()

Returns the SP start.

Returns:

the SP start

getSpEnd

public int getSpEnd()

Returns the SP end.

Returns:

the SP end

getPdbAccession

public String getPdbAccession()

Returns the PDB accession.

Returns:

the PDB accession

getSpAccession

public String getSpAccession()

Returns the SP accession.

Returns:

the SP accession

getDifference

public int getDifference()

Returns the difference.

Returns:

the difference