Package com.compomics.util.pdbfinder.das.readers

Class DasAlignment

java.lang.Object
com.compomics.util.pdbfinder.das.readers.DasAlignment
public class DasAlignment extends Object
DasAlignment.
Author:
Niklaas Colaert, Yehia Farag

  • Constructor Details

    • DasAlignment

      public DasAlignment()
      Empty default constructor

    • DasAlignment

      public DasAlignment(com.google.gson.JsonObject aDasAlignment)
      Constructor.
      Parameters:
      aDasAlignment - the DAS alignment

  • Method Details

    • getResolution

      public String getResolution()
      Returns the resolution.
      Returns:
      the resolution

    • getExperimentType

      public String getExperimentType()
      Returns the experiment type.
      Returns:
      the experiment type

    • getHeader

      public String getHeader()
      Returns the header.
      Returns:
      the header

    • getTitle

      public String getTitle()
      Returns the title.
      Returns:
      the title

    • getPdbAccession

      public String getPdbAccession()
      Returns the PDB accession.
      Returns:
      the PDB accession

    • getSpAccession

      public String getSpAccession()
      Returns the SP accession.
      Returns:
      the SP accession

    • getAlignmentBlocks

      public AlignmentBlock[] getAlignmentBlocks()
      Returns the alignment blocks.
      Returns:
      the alignment blocks

    • getPdbGroup

      public String getPdbGroup()
      Returns the PDB groups.
      Returns:
      the PDB groups

    • readUrl

      public String readUrl(String aUrl, String aPdbAccession)
      Read a URL.
      Parameters:
      aUrl - the URL
      aPdbAccession - the PDB accession
      Returns:
      the sequence