Uses of Package
com.compomics.util.pride

Packages that use com.compomics.util.pride

Package	Description
com.compomics.util.experiment.biology.enzymes	Classes related to enzymes.
com.compomics.util.experiment.biology.ions	Experiment classes related to ions.
com.compomics.util.experiment.biology.ions.impl	Ion implementations.
com.compomics.util.experiment.biology.modifications
com.compomics.util.experiment.identification.matches	Experiment classes related to matches.
com.compomics.util.gui.modification	PTM GUI dialogs.
com.compomics.util.pride	Objects related to mapping to PRIDE.
com.compomics.util.pride.prideobjects	Objects related to mapping experiment annotation to PRIDE.

Classes in com.compomics.util.pride used by com.compomics.util.experiment.biology.enzymes

Class	Description
CvTerm	A simple CvTerm object.

Classes in com.compomics.util.pride used by com.compomics.util.experiment.biology.ions

Class	Description
CvTerm	A simple CvTerm object.

Classes in com.compomics.util.pride used by com.compomics.util.experiment.biology.ions.impl

Class	Description
CvTerm	A simple CvTerm object.

Classes in com.compomics.util.pride used by com.compomics.util.experiment.biology.modifications

Class	Description
CvTerm	A simple CvTerm object.

Classes in com.compomics.util.pride used by com.compomics.util.experiment.identification.matches

Class	Description
CvTerm	A simple CvTerm object.

Classes in com.compomics.util.pride used by com.compomics.util.gui.modification

Class	Description
PtmToPrideMap	Map linking user modification names to Unimod CV terms.

Classes in com.compomics.util.pride used by com.compomics.util.pride

Class	Description
CvTerm	A simple CvTerm object.
PrideObjectsFactory	This factory manages the pride objects saved in the user folder.
PtmToPrideMap	Map linking user modification names to Unimod CV terms.

Classes in com.compomics.util.pride used by com.compomics.util.pride.prideobjects

Class	Description
CvTerm	A simple CvTerm object.
PrideObject	Interface for a PRIDE object.