Package com.compomics.util.pride.prideobjects

Class Instrument

java.lang.Object

com.compomics.util.experiment.personalization.ExperimentObject

com.compomics.util.pride.prideobjects.Instrument

All Implemented Interfaces:

PrideObject, Serializable

public class Instrument
extends ExperimentObject
implements PrideObject

An object for storing Instrument details.

Author:

Harald Barsnes

See Also:

• Serialized Form

Field Summary

Fields inherited from class com.compomics.util.experiment.personalization.ExperimentObject

NO_KEY

Constructor Summary

Constructors

Constructor	Description
Instrument()	Empty default constructor
Instrument(String name, CvTerm source, CvTerm detector, ArrayList<CvTerm> cvTerms)	Create a new Instrument object.

Method Summary

Modifier and Type	Method	Description
ArrayList<CvTerm>	getCvTerms()	Returns the CV terms.
static ArrayList<Instrument>	getDefaultInstruments()	Returns a list of predefined instruments.
CvTerm	getDetector()	Returns the instrument detector.
String	getFileName()	Returns the name to use when serializing the object.
String	getName()	Returns the instrument name.
CvTerm	getSource()	Returns the instrument source.
void	setCvTerms(ArrayList<CvTerm> cvTerms)	Set the CV terms.
void	setDetector(CvTerm detector)	Set the instrument detector.
void	setName(String name)	Set the instrument name.
void	setSource(CvTerm source)	Set the instrument source.

Methods inherited from class com.compomics.util.experiment.personalization.ExperimentObject

addUrParam, asLong, clearParametersMap, getId, getUrParam, getUrParams, removeUrParam, setId, setUrParams

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

Instrument

public Instrument()

Empty default constructor

Instrument

public Instrument(String name,
 CvTerm source,
 CvTerm detector,
 ArrayList<CvTerm> cvTerms)

Create a new Instrument object.

Parameters:

name - the name

source - the source

detector - the detector

cvTerms - the CV terms

Method Details

getName

public String getName()

Returns the instrument name.

Returns:

the name

setName

public void setName(String name)

Set the instrument name.

Parameters:

name - the name to set

getCvTerms

public ArrayList<CvTerm> getCvTerms()

Returns the CV terms.

Returns:

the cvTerms

setCvTerms

public void setCvTerms(ArrayList<CvTerm> cvTerms)

Set the CV terms.

Parameters:

cvTerms - the cvTerms to set

getSource

public CvTerm getSource()

Returns the instrument source.

Returns:

the source

setSource

public void setSource(CvTerm source)

Set the instrument source.

Parameters:

source - the source to set

getDetector

public CvTerm getDetector()

Returns the instrument detector.

Returns:

the detector

setDetector

public void setDetector(CvTerm detector)

Set the instrument detector.

Parameters:

detector - the detector to set

getDefaultInstruments

public static ArrayList<Instrument> getDefaultInstruments()

Returns a list of predefined instruments.

Returns:

a list of predefined instruments

getFileName

public String getFileName()

Description copied from interface: PrideObject

Returns the name to use when serializing the object.

Specified by:

getFileName in interface PrideObject

Returns:

the name to use when serializing the object