Package com.compomics.util.pride.prideobjects

Class Protocol

java.lang.Object

com.compomics.util.experiment.personalization.ExperimentObject

com.compomics.util.pride.prideobjects.Protocol

All Implemented Interfaces:

PrideObject, Serializable

public class Protocol
extends ExperimentObject
implements PrideObject

An object for storing Protocol details.

Author:

Harald Barsnes

See Also:

• Serialized Form

Field Summary

Fields inherited from class com.compomics.util.experiment.personalization.ExperimentObject

NO_KEY

Constructor Summary

Constructors

Constructor	Description
Protocol()	Empty default constructor
Protocol(String name, ArrayList<CvTerm> cvTerms)	Create a new Protocol object.

Method Summary

Modifier and Type	Method	Description
ArrayList<CvTerm>	getCvTerms()	Returns the CV terms.
static ArrayList<Protocol>	getDefaultProtocols()	Returns a list of default protocols.
String	getFileName()	Returns the name to use when serializing the object.
String	getName()	Returns the protocol name.
void	setCvTerms(ArrayList<CvTerm> cvTerms)	Set the CV terms.
void	setName(String name)	Set the protocol name.

Methods inherited from class com.compomics.util.experiment.personalization.ExperimentObject

addUrParam, asLong, clearParametersMap, getId, getUrParam, getUrParams, removeUrParam, setId, setUrParams

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

Protocol

public Protocol()

Empty default constructor

Protocol

public Protocol(String name,
 ArrayList<CvTerm> cvTerms)

Create a new Protocol object.

Parameters:

name - the name

cvTerms - the CV terms

Method Details

getName

public String getName()

Returns the protocol name.

Returns:

the name

setName

public void setName(String name)

Set the protocol name.

Parameters:

name - the name to set

getCvTerms

public ArrayList<CvTerm> getCvTerms()

Returns the CV terms.

Returns:

the cvTerms

setCvTerms

public void setCvTerms(ArrayList<CvTerm> cvTerms)

Set the CV terms.

Parameters:

cvTerms - the cvTerms to set

getDefaultProtocols

public static ArrayList<Protocol> getDefaultProtocols()

Returns a list of default protocols.

Returns:

a list of default protocols

getFileName

public String getFileName()

Description copied from interface: PrideObject

Returns the name to use when serializing the object.

Specified by:

getFileName in interface PrideObject

Returns:

the name to use when serializing the object