Uses of Class
com.compomics.util.pride.prideobjects.Protocol

Packages that use Protocol

Package	Description
com.compomics.util.pride	Objects related to mapping to PRIDE.
com.compomics.util.pride.prideobjects	Objects related to mapping experiment annotation to PRIDE.

Uses of Protocol in com.compomics.util.pride

Methods in com.compomics.util.pride that return types with arguments of type Protocol

Modifier and Type	Method	Description
HashMap<String,Protocol>	PrideObjectsFactory.getProtocols()	Returns the protocols.

Methods in com.compomics.util.pride with parameters of type Protocol

Modifier and Type	Method	Description
void	PrideObjectsFactory.addProtocol(Protocol protocol)	Adds a protocol in the PRIDE objects.
void	PrideObjectsFactory.deleteProtocol(Protocol protocol)	Delete the given protocol.

Uses of Protocol in com.compomics.util.pride.prideobjects

Methods in com.compomics.util.pride.prideobjects that return types with arguments of type Protocol

Modifier and Type	Method	Description
static ArrayList<Protocol>	Protocol.getDefaultProtocols()	Returns a list of default protocols.