Package com.compomics.util.protein

Class MolecularFormula

java.lang.Object
com.compomics.util.protein.MolecularFormula
public class MolecularFormula extends Object
This class represents the molecular formula. Basically it count the number of atoms. Created by IntelliJ IDEA. User: Niklaas Date: 16-Aug-2010 Time: 08:25:22

  • Constructor Details

    • MolecularFormula

      public MolecularFormula()
      Default constructor

    • MolecularFormula

      public MolecularFormula(Sequence lSequence)
      Constructor.
      Parameters:
      lSequence - the amino acid sequence

  • Method Details

    • addElement

      public void addElement(MolecularElement lMolecularElement, Integer lCount)
      Method to add MolecularElements to this formula
      Parameters:
      lMolecularElement - The molecular element
      lCount - The count

    • addMolecularFormula

      public void addMolecularFormula(MolecularFormula lMolecularFormula)
      Method to add whole formulas to this formula
      Parameters:
      lMolecularFormula - The MolecularFormula to add

    • getElementCount

      public int getElementCount(MolecularElement lMolecularElement)
      Getter for the count of a specific element
      Parameters:
      lMolecularElement - The MolecularElement to get to count for
      Returns:
      Int with the count

    • toString

      public String toString()
      To string method
      Overrides:
      toString in class Object
      Returns:
      String