Package com.compomics.util.protein

package com.compomics.util.protein
Classes concerning useful Objects and their operations for modeling and handling proteins.
  • Classes
    Class
    Description
    AASequenceImpl
    This class represents a sequence for a protein or peptide.
    DualEnzyme
    This class implements an enzyme with a dual specificity; the N-terminus of a resultant peptide will have certain residue, the C-terminus will have another, eg.
    Enzyme
    This class implements the functionality for an Enzyme.
    ModificationFactory
    This class can be used to generate a Modification instance from a code or title.
    ModificationImplementation
    This class implements a specific Modification.
    ModificationTemplate
    This class holds a template for a Modification, meaning that it contains all shared characteristics of a Modification, but not the instance-specific one.
    MolecularFormula
    This class represents the molecular formula.
    Protein
    This class implements the behaviour for a Protein instance.
    RegExEnzyme
    This class implements the functionality of an Enzyme by simulating digestion based on a regular expression.