Package eu.isas.peptideshaker.cmd

Class PathSettingsCLI

java.lang.Object
eu.isas.peptideshaker.cmd.PathSettingsCLI
public class PathSettingsCLI extends Object
Allows the user to set the path settings in command line.
Author:
Marc Vaudel, Harald Barsnes

  • Constructor Details

    • PathSettingsCLI

      public PathSettingsCLI(PathSettingsCLIInputBean pathSettingsCLIInputBean)
      Constructor.
      Parameters:
      pathSettingsCLIInputBean - an input bean containing the user parameters

  • Method Details

    • call

      public Object call()

    • setPathSettings

      public void setPathSettings()
      Sets the path settings according to the pathSettingsCLIInputBean.

    • main

      public static void main(String[] args)
      Starts the launcher by calling the launch method. Use this as the main class in the jar file.
      Parameters:
      args - the command line arguments

    • toString

      public String toString()
      Overrides:
      toString in class Object

    • extractAndUpdatePathOptions

      public static String[] extractAndUpdatePathOptions(String[] args) throws org.apache.commons.cli.ParseException
      If the arguments contains changes to the paths these arguments will be extracted and the paths updated, before the remaining non-path options are returned for further processing.
      Parameters:
      args - the command line arguments
      Returns:
      a list of all non-path related arguments
      Throws:
      org.apache.commons.cli.ParseException - if a ParseException occurs