Package eu.isas.peptideshaker.cmd

Class PeptideShakerIdentificationParametersCLIParams

java.lang.Object

eu.isas.peptideshaker.cmd.PeptideShakerIdentificationParametersCLIParams

public class PeptideShakerIdentificationParametersCLIParams
extends Object

This class provides the parameters which can be used for the identification parameters cli in PeptideShaker.

Author:

Marc Vaudel, Harald Barsnes

Constructor Summary

Constructors

Constructor	Description
PeptideShakerIdentificationParametersCLIParams()

Method Summary

Modifier and Type	Method	Description
static void	createOptionsCLI(org.apache.commons.cli.Options aOptions)	Creates the options for the command line interface based on the possible values.
static String	getOptionsAsString()	Returns the options as a string.
static String	getParametersOptionsAsString()	Returns the options as a string.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

PeptideShakerIdentificationParametersCLIParams

public PeptideShakerIdentificationParametersCLIParams()

Method Details

createOptionsCLI

public static void createOptionsCLI(org.apache.commons.cli.Options aOptions)

Creates the options for the command line interface based on the possible values.

Parameters:

aOptions - the options object where the options will be added

getOptionsAsString

public static String getOptionsAsString()

Returns the options as a string.

Returns:

the options as a string

getParametersOptionsAsString

public static String getParametersOptionsAsString()

Returns the options as a string.

Returns:

the options as a string