Uses of Package
eu.isas.peptideshaker.cmd

Packages that use eu.isas.peptideshaker.cmd

Package	Description
eu.isas.peptideshaker.cmd	Command line usage.

Classes in eu.isas.peptideshaker.cmd used by eu.isas.peptideshaker.cmd

Class	Description
FollowUpCLIInputBean	This class is a simple bean wrapping the CLI parameters provided in an Options instance.
FollowUpCLIParams	Enum class specifying the Command Line Parameters for follow up analysis.
MzidCLIInputBean	This class is a simple bean wrapping the CLI parameters provided in an Options instance.
MzidCLIParams	Enum class specifying the Command Line Parameters for mzid export.
PathSettingsCLIInputBean	Parses the command line and retrieves the user input.
PathSettingsCLIParams	Enum of the command line parameters for path setting.
PeptideShakerCLIInputBean	This class is a simple bean wrapping the CLI parameters provided in an Options instance.
PeptideShakerCLIParams	Enum class specifying the Command Line Parameters for PeptideShaker.
ReportCLIInputBean	This class is a simple bean wrapping the CLI parameters provided in an Options instance.
ReportCLIParams	This class provides the available reports as command line parameters.
StirredOptions	Enum class specifying the ModificationsCLI parameters.