Package eu.isas.peptideshaker.export.sections

Class PsAnnotationSection

java.lang.Object
eu.isas.peptideshaker.export.sections.PsAnnotationSection
public class PsAnnotationSection extends Object
This class outputs the annotation related export features.
Author:
Marc Vaudel, Harald Barsnes

  • Constructor Summary

    Constructors
    Constructor
    Description
    PsAnnotationSection(ArrayList<com.compomics.util.io.export.ExportFeature> exportFeatures, boolean indexes, boolean header, com.compomics.util.io.export.ExportWriter writer)
    Constructor.

  • Method Summary

    Modifier and Type
    Method
    Description
    void
    writeSection(com.compomics.util.experiment.identification.spectrum_annotation.AnnotationParameters annotationPreferences, com.compomics.util.waiting.WaitingHandler waitingHandler)
    Writes the desired section.

    Methods inherited from class java.lang.Object

    clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

  • Constructor Details

    • PsAnnotationSection

      public PsAnnotationSection(ArrayList<com.compomics.util.io.export.ExportFeature> exportFeatures, boolean indexes, boolean header, com.compomics.util.io.export.ExportWriter writer)
      Constructor.
      Parameters:
      exportFeatures - the features to export in this section
      indexes - indicates whether the line index should be written
      header - indicates whether the table header should be written
      writer - the writer which will write to the file

  • Method Details

    • writeSection

      public void writeSection(com.compomics.util.experiment.identification.spectrum_annotation.AnnotationParameters annotationPreferences, com.compomics.util.waiting.WaitingHandler waitingHandler) throws IOException
      Writes the desired section.
      Parameters:
      annotationPreferences - the annotation preferences of the project
      waitingHandler - the waiting handler
      Throws:
      IOException - exception thrown whenever an error occurred while writing the file.