Package eu.isas.peptideshaker.followup

Class PSMIdentExport

java.lang.Object
eu.isas.peptideshaker.followup.PSMIdentExport
public class PSMIdentExport extends Object
Export for PSM identifications.
Author:
Dafni Skiadopoulou

  • Constructor Summary

    Constructors
    Constructor
    Description
    PSMIdentExport()
     

  • Method Summary

    Modifier and Type
    Method
    Description
    static void
    psmIdentExport(File psmIdentifiersFile, com.compomics.util.experiment.identification.Identification identification, com.compomics.util.parameters.identification.search.ModificationParameters modificationParameters, com.compomics.util.experiment.io.biology.protein.SequenceProvider sequenceProvider, com.compomics.util.parameters.identification.advanced.SequenceMatchingParameters sequenceMatchingParameters, com.compomics.util.experiment.mass_spectrometry.SpectrumProvider spectrumProvider, com.compomics.util.waiting.WaitingHandler waitingHandler)
    Export the PSM identifications.

    Methods inherited from class java.lang.Object

    clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

  • Constructor Details

    • PSMIdentExport

      public PSMIdentExport()

  • Method Details

    • psmIdentExport

      public static void psmIdentExport(File psmIdentifiersFile, com.compomics.util.experiment.identification.Identification identification, com.compomics.util.parameters.identification.search.ModificationParameters modificationParameters, com.compomics.util.experiment.io.biology.protein.SequenceProvider sequenceProvider, com.compomics.util.parameters.identification.advanced.SequenceMatchingParameters sequenceMatchingParameters, com.compomics.util.experiment.mass_spectrometry.SpectrumProvider spectrumProvider, com.compomics.util.waiting.WaitingHandler waitingHandler)
      Export the PSM identifications.
      Parameters:
      psmIdentifiersFile - The file to write the export.
      identification - The identification object containing the matches.
      modificationParameters - The modification parameters.
      sequenceProvider - The sequence provider.
      sequenceMatchingParameters - The sequence matching parameters.
      spectrumProvider - The spectrum provider.
      waitingHandler - The waiting handler.