Package eu.isas.peptideshaker.protein_inference

Class TagMapper

java.lang.Object
eu.isas.peptideshaker.protein_inference.TagMapper
public class TagMapper extends Object
This class can be used to map tags to proteins.
Author:
Marc Vaudel

  • Constructor Summary

    Constructors
    Constructor
    Description
    TagMapper(com.compomics.util.parameters.identification.IdentificationParameters identificationParameters, com.compomics.util.exceptions.ExceptionHandler exceptionHandler)
    Constructor.

  • Method Summary

    Modifier and Type
    Method
    Description
    void
    mapTags(ArrayList<com.compomics.util.experiment.identification.matches.SpectrumMatch> spectrumMatches, com.compomics.util.experiment.identification.protein_inference.FastaMapper fastaMapper, com.compomics.util.waiting.WaitingHandler waitingHandler)
    Maps the tags to the proteins in the sequence factory.

    Methods inherited from class java.lang.Object

    clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

  • Constructor Details

    • TagMapper

      public TagMapper(com.compomics.util.parameters.identification.IdentificationParameters identificationParameters, com.compomics.util.exceptions.ExceptionHandler exceptionHandler)
      Constructor.
      Parameters:
      identificationParameters - the identification parameters
      exceptionHandler - an exception handler

  • Method Details

    • mapTags

      public void mapTags(ArrayList<com.compomics.util.experiment.identification.matches.SpectrumMatch> spectrumMatches, com.compomics.util.experiment.identification.protein_inference.FastaMapper fastaMapper, com.compomics.util.waiting.WaitingHandler waitingHandler)
      Maps the tags to the proteins in the sequence factory.
      Parameters:
      spectrumMatches - the spectrum matches containing the tags to map
      fastaMapper - the FASTA mapper to use
      waitingHandler - a waiting handler