Package eu.isas.peptideshaker.scoring.maps.specific

Class SimpleSpecificMap

java.lang.Object

com.compomics.util.experiment.personalization.ExperimentObject

eu.isas.peptideshaker.scoring.maps.SpecificTargetDecoyMap

eu.isas.peptideshaker.scoring.maps.specific.SimpleSpecificMap

All Implemented Interfaces:

Serializable

public class SimpleSpecificMap
extends SpecificTargetDecoyMap

Specific target decoy map where the highest value with enough values is kept.

Author:

Marc Vaudel

See Also:

• Serialized Form

Field Summary

Fields inherited from class eu.isas.peptideshaker.scoring.maps.SpecificTargetDecoyMap

fileSpecificGrouping, fileSpecificMaps, groupedMaps, grouping

Fields inherited from class com.compomics.util.experiment.personalization.ExperimentObject

NO_KEY

Constructor Summary

Constructors

Constructor	Description
SimpleSpecificMap()

Method Summary

Modifier and Type	Method	Description
void	clean(double minimalFDR)	Handles sparse maps.

Methods inherited from class eu.isas.peptideshaker.scoring.maps.SpecificTargetDecoyMap

addPoint, estimateProbabilities, getCategoriesFromGroupedFiles, getChargeGroupingMap, getCorrectedCharge, getFilesAtCategory, getGroupedCategories, getMapsSize, getPossibleCategories, getProbability, getTargetDecoyMap, getTargetDecoyMaps, isFileGrouped

Methods inherited from class com.compomics.util.experiment.personalization.ExperimentObject

addUrParam, asLong, clearParametersMap, getId, getUrParam, getUrParams, removeUrParam, setId, setUrParams

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

SimpleSpecificMap

public SimpleSpecificMap()

Method Details

clean

public void clean(double minimalFDR)

Description copied from class: SpecificTargetDecoyMap

Handles sparse maps.

Specified by:

clean in class SpecificTargetDecoyMap

Parameters:

minimalFDR - the minimal FDR which should be achievable