Uses of Package
eu.isas.peptideshaker.scoring.targetdecoy

Packages that use eu.isas.peptideshaker.scoring.targetdecoy

Package	Description
eu.isas.peptideshaker.gui	GUI dialogs and helper classes.
eu.isas.peptideshaker.protein_inference	Protein inference classes.
eu.isas.peptideshaker.scoring	Identification scoring.
eu.isas.peptideshaker.scoring.maps	Target decoy maps.
eu.isas.peptideshaker.scoring.psm_scoring	PSM scoring.
eu.isas.peptideshaker.scoring.targetdecoy	Target/decoy related classes.
eu.isas.peptideshaker.validation	Matches validation.

Classes in eu.isas.peptideshaker.scoring.targetdecoy used by eu.isas.peptideshaker.gui

Class	Description
TargetDecoyMap	This map contains the information of a target/decoy strategy.

Classes in eu.isas.peptideshaker.scoring.targetdecoy used by eu.isas.peptideshaker.protein_inference

Class	Description
TargetDecoyMap	This map contains the information of a target/decoy strategy.

Classes in eu.isas.peptideshaker.scoring.targetdecoy used by eu.isas.peptideshaker.scoring

Class	Description
TargetDecoyMap	This map contains the information of a target/decoy strategy.

Classes in eu.isas.peptideshaker.scoring.targetdecoy used by eu.isas.peptideshaker.scoring.maps

Class	Description
TargetDecoyMap	This map contains the information of a target/decoy strategy.

Classes in eu.isas.peptideshaker.scoring.targetdecoy used by eu.isas.peptideshaker.scoring.psm_scoring

Class	Description
TargetDecoyMap	This map contains the information of a target/decoy strategy.

Classes in eu.isas.peptideshaker.scoring.targetdecoy used by eu.isas.peptideshaker.scoring.targetdecoy

Class	Description
TargetDecoyMap	This map contains the information of a target/decoy strategy.
TargetDecoyPoint	This class represents a target/decoy hit in its simplest form.
TargetDecoyResults	This class will compile Target/decoy results of a certain target/decoy map according to user's validation criteria
TargetDecoySeries	This class will contain the PEP, FDR and FNR values of a target decoy map directly available for plotting.

Classes in eu.isas.peptideshaker.scoring.targetdecoy used by eu.isas.peptideshaker.validation

Class	Description
TargetDecoyMap	This map contains the information of a target/decoy strategy.