Package eu.isas.reporter.calculation

Class RatioEstimator

java.lang.Object

eu.isas.reporter.calculation.RatioEstimator

public class RatioEstimator
extends Object

This class estimates ratios at the peptide and protein level.

Author:

Marc Vaudel, Harald Barsnes

Constructor Summary

Constructors

Constructor	Description
RatioEstimator()

Method Summary

Modifier and Type	Method	Description
static Double	estimateRatios(RatioEstimationSettings ratioEstimationSettings, ArrayList<Double> ratios)	Estimate the ratio resulting from the compilation of several ratios.
static Double	mEstimate(RatioEstimationSettings ratioEstimationSettings, double[] ratios)	Returns the compilation of various ratios using a redescending M-estimator.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

RatioEstimator

public RatioEstimator()

Method Details

estimateRatios

public static Double estimateRatios(RatioEstimationSettings ratioEstimationSettings,
 ArrayList<Double> ratios)

Estimate the ratio resulting from the compilation of several ratios.

Parameters:

ratioEstimationSettings - the ratio estimation settings

ratios - The input ratios

Returns:

the resulting ratio

mEstimate

public static Double mEstimate(RatioEstimationSettings ratioEstimationSettings,
 double[] ratios)

Returns the compilation of various ratios using a redescending M-estimator.

Parameters:

ratioEstimationSettings - the ratio estimation settings

ratios - various input ratios

Returns:

the resulting ratio