Package eu.isas.reporter.quantificationdetails

Class PeptideQuantificationDetails

java.lang.Object
eu.isas.reporter.quantificationdetails.PeptideQuantificationDetails
public class PeptideQuantificationDetails extends Object
This class contains the quantitative information at the peptide level.
Author:
Marc Vaudel

  • Constructor Details

    • PeptideQuantificationDetails

      public PeptideQuantificationDetails()

  • Method Details

    • getRatio

      public Double getRatio(String reporterIonName, com.compomics.util.experiment.normalization.NormalizationFactors normalizationFactors)
      Returns the ratio of a given sample normalized if the given reporter ion quantification has normalization factors. null if not found.
      Parameters:
      reporterIonName - the index of sample of interest
      normalizationFactors - the normalization factors
      Returns:
      the ratio for this sample, null if not set

    • setRawRatio

      public void setRawRatio(String reporterIonName, double value)
      Sets a raw (not normalized) normalized ratio.
      Parameters:
      reporterIonName - the index of the sample
      value - the value of the raw (not normalized) ratio

    • getRawRatio

      public Double getRawRatio(String reporterIonName)
      Returns the raw (not normalized) ratio of a given sample. null if not found.
      Parameters:
      reporterIonName - the index of sample of interest
      Returns:
      the raw (not normalized) ratio for this sample, null if not set