Package eu.isas.reporter.quantificationdetails

Class SpectrumQuantificationDetails

java.lang.Object

eu.isas.reporter.quantificationdetails.SpectrumQuantificationDetails

public class SpectrumQuantificationDetails
extends Object

This class contains the quantitative information at the spectrum level.

Author:

Marc Vaudel

Constructor Summary

Constructors

Constructor	Description
SpectrumQuantificationDetails()

Method Summary

Modifier and Type	Method	Description
Double	getDeisotopedIntensity(String reporterIonName)	Returns the intensity of the given sample.
Double	getRatio(String reporterIonName)	Returns the ratio of a given sample.
com.compomics.util.experiment.identification.matches.IonMatch	getRepoterMatch(String reporterIonName)	Returns the reporter ion match of the given sample.
void	setDeisotopedIntensity(String reporterIonName, double value)	Sets the value of a deisotoped intensity.
void	setRatio(String sampleIndex, double value)	Sets a ratio.
void	setReporterMatch(String reporterIonName, com.compomics.util.experiment.identification.matches.IonMatch reporterMatch)	Sets the value of a reporter ion match.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

SpectrumQuantificationDetails

public SpectrumQuantificationDetails()

Method Details

setRatio

public void setRatio(String sampleIndex,
 double value)

Sets a ratio.

Parameters:

sampleIndex - the index of the sample

value - the value of the ratio

getRatio

public Double getRatio(String reporterIonName)

Returns the ratio of a given sample.

Parameters:

reporterIonName - the index of sample of interest

Returns:

the ratio for this sample, null if not set

setDeisotopedIntensity

public void setDeisotopedIntensity(String reporterIonName,
 double value)

Sets the value of a deisotoped intensity.

Parameters:

reporterIonName - the index of the sample

value - the value of the deisotoped intensity

getDeisotopedIntensity

public Double getDeisotopedIntensity(String reporterIonName)

Returns the intensity of the given sample.

Parameters:

reporterIonName - the index of the sample

Returns:

the intensity

setReporterMatch

public void setReporterMatch(String reporterIonName,
 com.compomics.util.experiment.identification.matches.IonMatch reporterMatch)

Sets the value of a reporter ion match.

Parameters:

reporterIonName - the index of the sample

reporterMatch - the reporter ion match

getRepoterMatch

public com.compomics.util.experiment.identification.matches.IonMatch getRepoterMatch(String reporterIonName)

Returns the reporter ion match of the given sample. Null if none.

Parameters:

reporterIonName - the index of the sample

Returns:

the reporter ion match