Uses of Class
eu.isas.reporter.quantificationdetails.PeptideQuantificationDetails

Packages that use PeptideQuantificationDetails

Package	Description
eu.isas.reporter	Main package.
eu.isas.reporter.calculation	Package containing classes used for the calculation.

Uses of PeptideQuantificationDetails in eu.isas.reporter

Methods in eu.isas.reporter that return PeptideQuantificationDetails

Modifier and Type	Method	Description
static PeptideQuantificationDetails	Reporter.estimatePeptideMatchQuantificationDetails(com.compomics.util.experiment.identification.Identification identification, com.compomics.util.experiment.mass_spectrometry.SpectrumProvider spectrumProvider, QuantificationFeaturesGenerator quantificationFeaturesGenerator, RatioEstimationSettings ratioEstimationSettings, com.compomics.util.experiment.quantification.reporterion.ReporterIonQuantification reporterIonQuantification, com.compomics.util.experiment.identification.matches.PeptideMatch peptideMatch, com.compomics.util.waiting.WaitingHandler waitingHandler)	Returns the quantification details of a peptide match.

Uses of PeptideQuantificationDetails in eu.isas.reporter.calculation

Methods in eu.isas.reporter.calculation that return PeptideQuantificationDetails

Modifier and Type	Method	Description
PeptideQuantificationDetails	QuantificationFeaturesCache.getPeptideMatchQuantificationDetails(int nPsms, Long matchKey)	Returns peptide quantification details, null if not in cache.
PeptideQuantificationDetails	QuantificationFeaturesGenerator.getPeptideMatchQuantificationDetails(com.compomics.util.experiment.mass_spectrometry.SpectrumProvider spectrumProvider, com.compomics.util.experiment.identification.matches.PeptideMatch peptideMatch, com.compomics.util.waiting.WaitingHandler waitingHandler)	Returns the quantification details of a peptide match.

Methods in eu.isas.reporter.calculation with parameters of type PeptideQuantificationDetails

Modifier and Type	Method	Description
void	QuantificationFeaturesCache.addPeptideMatchQuantificationDetails(int nPeptides, Long matchKey, PeptideQuantificationDetails matchQuantificationDetails)	Adds peptide quantification details ratio to the cache.