Uses of Class
eu.isas.reporter.quantificationdetails.ProteinQuantificationDetails

Packages that use ProteinQuantificationDetails

Package	Description
eu.isas.reporter	Main package.
eu.isas.reporter.calculation	Package containing classes used for the calculation.

Uses of ProteinQuantificationDetails in eu.isas.reporter

Methods in eu.isas.reporter that return ProteinQuantificationDetails

Modifier and Type	Method	Description
static ProteinQuantificationDetails	Reporter.estimateProteinMatchQuantificationDetails(com.compomics.util.experiment.identification.Identification identification, com.compomics.util.experiment.mass_spectrometry.SpectrumProvider spectrumProvider, com.compomics.util.experiment.identification.features.IdentificationFeaturesGenerator identificationFeaturesGenerator, QuantificationFeaturesGenerator quantificationFeaturesGenerator, RatioEstimationSettings ratioEstimationSettings, com.compomics.util.experiment.quantification.reporterion.ReporterIonQuantification reporterIonQuantification, com.compomics.util.parameters.identification.search.SearchParameters searchParameters, com.compomics.util.experiment.identification.matches.ProteinMatch proteinMatch, com.compomics.util.waiting.WaitingHandler waitingHandler)	Returns the quantification details of a protein match.

Uses of ProteinQuantificationDetails in eu.isas.reporter.calculation

Methods in eu.isas.reporter.calculation that return ProteinQuantificationDetails

Modifier and Type	Method	Description
ProteinQuantificationDetails	QuantificationFeaturesCache.getProteinMatchQuantificationDetails(int nPeptides, long matchKey)	Returns protein quantification details, null if not in cache.
ProteinQuantificationDetails	QuantificationFeaturesGenerator.getProteinMatchQuantificationDetails(com.compomics.util.experiment.mass_spectrometry.SpectrumProvider spectrumProvider, long matchKey, com.compomics.util.waiting.WaitingHandler waitingHandler)	Returns the quantification details of a protein match.

Methods in eu.isas.reporter.calculation with parameters of type ProteinQuantificationDetails

Modifier and Type	Method	Description
void	QuantificationFeaturesCache.addProteinMatchQuantificationDetails(int nPeptides, long matchKey, ProteinQuantificationDetails matchQuantificationDetails)	Adds protein quantification details to the cache.