Package eu.isas.reporter.settings

Class ReporterSettings

java.lang.Object
eu.isas.reporter.settings.ReporterSettings
All Implemented Interfaces:
Serializable
public class ReporterSettings extends Object implements Serializable
This class contains the reporter settings for this project.
Author:
Marc Vaudel, Harald Barsnes
See Also:

  • Constructor Details

    • ReporterSettings

      public ReporterSettings()
      Constructor.

  • Method Details

    • clone

      public ReporterSettings clone() throws CloneNotSupportedException
      Overrides:
      clone in class Object
      Throws:
      CloneNotSupportedException

    • isSameAs

      public boolean isSameAs(ReporterSettings anotherSetting)
      Indicates whether another setting is the same as this one.
      Parameters:
      anotherSetting - another setting
      Returns:
      a boolean indicating whether another setting is the same as this one

    • getAnnotationParameters

      public com.compomics.util.experiment.identification.spectrum_annotation.AnnotationParameters getAnnotationParameters()
      Returns the spectrum annotation parameters.
      Returns:
      the spectrum annotation parameters

    • setAnnotationParameters

      public void setAnnotationParameters(com.compomics.util.experiment.identification.spectrum_annotation.AnnotationParameters annotationParameters)
      Sets the spectrum annotation parameters.
      Parameters:
      annotationParameters - the spectrum annotation parameters

    • getProjectDetails

      public ProjectDetails getProjectDetails()
      Returns the project details.
      Returns:
      the project details

    • setProjectDetails

      public void setProjectDetails(ProjectDetails projectDetails)
      Sets the project details.
      Parameters:
      projectDetails - the project details

    • getReporterIonSelectionSettings

      public ReporterIonSelectionSettings getReporterIonSelectionSettings()
      Returns the reporter ion selection settings.
      Returns:
      the reporter ion selection settings

    • setReporterIonSelectionSettings

      public void setReporterIonSelectionSettings(ReporterIonSelectionSettings reporterIonSelectionSettings)
      Sets the reporter ion selection settings.
      Parameters:
      reporterIonSelectionSettings - the reporter ion selection settings

    • getRatioEstimationSettings

      public RatioEstimationSettings getRatioEstimationSettings()
      Returns the ratio estimation settings.
      Returns:
      the ratio estimation settings

    • setRatioEstimationSettings

      public void setRatioEstimationSettings(RatioEstimationSettings ratioEstimationSettings)
      Sets the ratio estimation settings.
      Parameters:
      ratioEstimationSettings - the ratio estimation settings

    • getNormalizationSettings

      public NormalizationSettings getNormalizationSettings()
      Returns the normalization settings.
      Returns:
      the normalization settings

    • setNormalizationSettings

      public void setNormalizationSettings(NormalizationSettings normalizationSettings)
      Sets the normalization settings.
      Parameters:
      normalizationSettings - the normalization settings