Hierarchy For All Packages

Package Hierarchies:

• eu.isas.reporter,
• eu.isas.reporter.calculation,
• eu.isas.reporter.calculation.clustering,
• eu.isas.reporter.calculation.clustering.keys,
• eu.isas.reporter.calculation.normalization,
• eu.isas.reporter.cli,
• eu.isas.reporter.export.report,
• eu.isas.reporter.export.report.sections,
• eu.isas.reporter.gui,
• eu.isas.reporter.gui.export,
• eu.isas.reporter.gui.resultpanels,
• eu.isas.reporter.gui.settings,
• eu.isas.reporter.gui.settings.display,
• eu.isas.reporter.gui.settings.quantification,
• eu.isas.reporter.gui.tablemodels,
• eu.isas.reporter.io,
• eu.isas.reporter.preferences,
• eu.isas.reporter.quantificationdetails,
• eu.isas.reporter.settings,
• eu.isas.reporter.utils

Class Hierarchy

• java.lang.Object
  • com.compomics.cli.identification_parameters.AbstractIdentificationParametersCli (implements java.util.concurrent.Callable<V>)
    • eu.isas.reporter.cli.IdentificationParametersCLI
  • javax.swing.table.AbstractTableModel (implements java.io.Serializable, javax.swing.table.TableModel)
    • javax.swing.table.DefaultTableModel (implements java.io.Serializable)
      • com.compomics.util.gui.tablemodels.SelfUpdatingTableModel
        • eu.isas.reporter.gui.tablemodels.PeptideTableModel
        • eu.isas.reporter.gui.tablemodels.ProteinTableModel
        • eu.isas.reporter.gui.tablemodels.PsmTableModel
  • eu.isas.reporter.cli.CLIExportMethods
  • eu.isas.reporter.calculation.clustering.ClusterBuilder
  • eu.isas.reporter.settings.ClusteringSettings (implements java.io.Serializable)
  • com.compomics.software.CompomicsWrapper
    • eu.isas.reporter.ReporterWrapper
  • java.awt.Component (implements java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable)
    • java.awt.Container
      • javax.swing.JComponent (implements java.io.Serializable)
        • javax.swing.JPanel (implements javax.accessibility.Accessible)
          • eu.isas.reporter.gui.JumpToPanel
          • eu.isas.reporter.gui.resultpanels.OverviewPanel
      • java.awt.Window (implements javax.accessibility.Accessible)
        • java.awt.Dialog
          • javax.swing.JDialog (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
            • eu.isas.reporter.gui.settings.display.ClusteringSettingsDialog
            • eu.isas.reporter.gui.LabellingEfficiencyDialog
            • eu.isas.reporter.gui.MethodSettingsDialog
            • eu.isas.reporter.gui.NewDialog
            • eu.isas.reporter.gui.settings.quantification.NormalizationSettingsDialog
            • eu.isas.reporter.gui.settings.quantification.RatioEstimationSettingsDialog
            • eu.isas.reporter.gui.ReagentOrderDialog
            • eu.isas.reporter.gui.export.ReportDialog
            • eu.isas.reporter.gui.settings.quantification.ReporterIonSelectionSettingsDialog
            • eu.isas.reporter.gui.settings.ReporterSettingsDialog
            • eu.isas.reporter.gui.WelcomeDialog
        • java.awt.Frame (implements java.awt.MenuContainer)
          • javax.swing.JFrame (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
            • eu.isas.reporter.gui.ReporterGUI (implements com.compomics.software.dialogs.JavaHomeOrMemoryDialogParent)
  • eu.isas.reporter.calculation.CorrectionMatrix
  • eu.isas.reporter.calculation.Deisotoper
  • eu.isas.reporter.preferences.DisplayPreferences (implements java.io.Serializable)
  • eu.isas.reporter.settings.NormalizationSettings (implements java.io.Serializable)
  • eu.isas.reporter.calculation.normalization.Normalizer
  • eu.isas.reporter.cli.PathSettingsCLI
  • eu.isas.reporter.cli.PathSettingsCLIInputBean
  • eu.isas.reporter.calculation.clustering.keys.PeptideClusterClassKey (implements eu.isas.reporter.calculation.clustering.ClusterClassKey, java.io.Serializable)
  • eu.isas.reporter.quantificationdetails.PeptideQuantificationDetails
  • eu.isas.reporter.preferences.ProjectDetails (implements java.io.Serializable)
  • eu.isas.reporter.io.ProjectImporter
  • eu.isas.reporter.io.ProjectSaver
  • eu.isas.reporter.utils.Properties
  • eu.isas.reporter.calculation.clustering.keys.ProteinClusterClassKey (implements eu.isas.reporter.calculation.clustering.ClusterClassKey, java.io.Serializable)
  • eu.isas.reporter.quantificationdetails.ProteinPtmQuantificationDetails
  • eu.isas.reporter.quantificationdetails.ProteinQuantificationDetails
  • eu.isas.reporter.calculation.clustering.keys.PsmClusterClassKey (implements eu.isas.reporter.calculation.clustering.ClusterClassKey, java.io.Serializable)
  • eu.isas.reporter.quantificationdetails.PsmQuantificationDetails
  • eu.isas.reporter.calculation.QuantificationFeaturesCache
  • eu.isas.reporter.calculation.QuantificationFeaturesGenerator
  • eu.isas.reporter.calculation.QuantificationFilter
  • eu.isas.reporter.settings.RatioEstimationSettings (implements java.io.Serializable)
  • eu.isas.reporter.calculation.RatioEstimator
  • eu.isas.reporter.cli.ReportCLIInputBean
  • eu.isas.reporter.Reporter
  • eu.isas.reporter.cli.ReporterCLIInputBean
  • eu.isas.reporter.export.report.ReporterExportFactory (implements com.compomics.util.io.export.ExportFactory)
  • eu.isas.reporter.settings.ReporterIonSelectionSettings (implements java.io.Serializable)
  • eu.isas.reporter.utils.ReporterMerger
  • eu.isas.reporter.preferences.ReporterPathPreferences
  • eu.isas.reporter.export.report.sections.ReporterPeptideSection
  • eu.isas.reporter.settings.ReporterPreferences (implements java.io.Serializable)
  • eu.isas.reporter.export.report.sections.ReporterProteinSection
  • eu.isas.reporter.export.report.sections.ReporterPsmSection
  • eu.isas.reporter.export.report.ReporterReportStyle (implements com.compomics.util.io.export.WorkbookStyle)
  • eu.isas.reporter.settings.ReporterSettings (implements java.io.Serializable)
  • eu.isas.reporter.ReporterZipFileChecker
  • eu.isas.reporter.utils.SpectrumMerger
  • eu.isas.reporter.quantificationdetails.SpectrumQuantificationDetails
  • eu.isas.peptideshaker.preferences.UserPreferencesParent
    • eu.isas.peptideshaker.utils.PsdbParent (implements java.lang.AutoCloseable)
      • eu.isas.reporter.cli.ReportCLI
      • eu.isas.reporter.cli.ReporterCLI (implements java.util.concurrent.Callable<V>)

Interface Hierarchy

• eu.isas.reporter.calculation.clustering.ClusterClassKey

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.lang.constant.Constable, java.io.Serializable)
    • eu.isas.reporter.gui.JumpToPanel.JumpType
    • eu.isas.reporter.calculation.normalization.NormalizationType
    • eu.isas.reporter.cli.PathSettingsCLIParams
    • eu.isas.reporter.quantificationdetails.ProteinRatioType
    • eu.isas.reporter.cli.ReportCLIParams
    • eu.isas.reporter.cli.ReporterCLIParameters
    • eu.isas.reporter.settings.ReporterIonsLocationType
    • eu.isas.reporter.preferences.ReporterPathPreferences.ReporterPathKey (implements com.compomics.software.settings.PathKey)