Package eu.isas.searchgui.cmd

package eu.isas.searchgui.cmd

Command line related classes.

Related Packages

Package	Description
eu.isas.searchgui	SearchGUI handler and wrapper.
eu.isas.searchgui.gui	GUI classes.
eu.isas.searchgui.parameters	Preference settings.
eu.isas.searchgui.processbuilders	The process builders.
eu.isas.searchgui.utilities	Utility classes used by the other classes.

Class	Description
FastaCLI	This class allows the user to work on the database in command line.
FastaCLIInputBean	This class contains the information necessary for running the FastaCLI.
FastaCLIParams	This class contains the parameters which can be used in the FASTA command line.
IdentificationParametersCLI	The SearchParametersCLI allows creating search parameters files using command line arguments.
PathSettingsCLI	Allows the user to set the path settings in command line.
PathSettingsCLIInputBean	Parses the command line and retrieves the user input.
PathSettingsCLIParams	Parameters for the path settings command line.
SearchCLI	This class can be used to control SearchGUI in command line.
SearchCLIdentificationParametersCLIParams	This class provides the parameters which can be used for the identification parameters cli in SearchGUI.
SearchCLIInputBean	The SearchCLIInputBean reads and stores command line options from a command line.
SearchCLIParams	Command line option parameters for SearchCLI.