Package eu.isas.searchgui.processbuilders

Class DirecTagProcessBuilder

java.lang.Object

eu.isas.searchgui.processbuilders.SearchGUIProcessBuilder

eu.isas.searchgui.processbuilders.DirecTagProcessBuilder

All Implemented Interfaces:

Runnable

public class DirecTagProcessBuilder
extends SearchGUIProcessBuilder

This class will set up and start a process to run DirecTag.

Author:

Thilo Muth, Harald Barsnes, Marc Vaudel

Field Summary

Fields

Modifier and Type	Field	Description
static final String	EXECUTABLE_FILE_NAME	Title of the DirecTag executable.

Fields inherited from class eu.isas.searchgui.processbuilders.SearchGUIProcessBuilder

exceptionHandler, waitingHandler

Constructor Summary

Constructors

Constructor	Description
DirecTagProcessBuilder(File exeFolder, File spectrumFile, int nThreads, File outputFolder, com.compomics.util.parameters.identification.search.SearchParameters searchParameters, com.compomics.util.waiting.WaitingHandler waitingHandler, com.compomics.util.exceptions.ExceptionHandler exceptionHandler)	Constructor.

Method Summary

Modifier and Type	Method	Description
String	getCurrentlyProcessedFileName()	Returns the file name of the currently processed file.
String	getType()	Returns the type of the process.

Methods inherited from class eu.isas.searchgui.processbuilders.SearchGUIProcessBuilder

endProcess, run, startProcess

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

EXECUTABLE_FILE_NAME

public static final String EXECUTABLE_FILE_NAME

Title of the DirecTag executable.

See Also:

• Constant Field Values

Constructor Details

DirecTagProcessBuilder

public DirecTagProcessBuilder(File exeFolder,
 File spectrumFile,
 int nThreads,
 File outputFolder,
 com.compomics.util.parameters.identification.search.SearchParameters searchParameters,
 com.compomics.util.waiting.WaitingHandler waitingHandler,
 com.compomics.util.exceptions.ExceptionHandler exceptionHandler)

Constructor.

Parameters:

exeFolder - the path to the executable

spectrumFile - the spectrum file

nThreads - the number of threads

outputFolder - the output folder

searchParameters - the search parameters

waitingHandler - the waiting handler

exceptionHandler - the exception handler

Method Details

getCurrentlyProcessedFileName

public String getCurrentlyProcessedFileName()

Description copied from class: SearchGUIProcessBuilder

Returns the file name of the currently processed file.

Specified by:

getCurrentlyProcessedFileName in class SearchGUIProcessBuilder

Returns:

the file name of the currently processed file

getType

public String getType()

Description copied from class: SearchGUIProcessBuilder

Returns the type of the process.

Specified by:

getType in class SearchGUIProcessBuilder

Returns:

the type of the process