Package eu.isas.searchgui.processbuilders

package eu.isas.searchgui.processbuilders

The process builders.

Related Packages

Package	Description
eu.isas.searchgui	SearchGUI handler and wrapper.
eu.isas.searchgui.cmd	Command line related classes.
eu.isas.searchgui.gui	GUI classes.
eu.isas.searchgui.parameters	Preference settings.
eu.isas.searchgui.utilities	Utility classes used by the other classes.

Class	Description
AndromedaProcessBuilder	ProcessBuilder for the Andromeda search engine.
CometProcessBuilder	ProcessBuilder for the Comet search engine.
DirecTagProcessBuilder	This class will set up and start a process to run DirecTag.
MakeblastdbProcessBuilder	This class takes care of starting the Makeblastdb Process.
MetaMorpheusProcessBuilder	ProcessBuilder for the MetaMorpheus search engine.
MetaMorpheusProcessBuilder.MetaMorpheusTaskType	The available MetaMorpheus task types.
MsAmandaProcessBuilder	This class will build files and start a process to perform an MS Amanda search.
MsConvertProcessBuilder	Process builder to run msconvert.
MsgfProcessBuilder	This class will set up and start a process to perform an MS-GF+ search.
MyriMatchProcessBuilder	This class will set up and start a process to perform a MyriMatch search.
NovorProcessBuilder	This class will set up and start a process to run Novor.
OmssaclProcessBuilder	This class takes care of building the omssacl process.
PeptideShakerProcessBuilder	This process builder runs PeptideShaker.
SageProcessBuilder	ProcessBuilder for the Sage search engine.
SearchGUIProcessBuilder	A simple ancestor class to reduce code duplication in formatdb, omssacl and tandem process builders.
TandemProcessBuilder	This class will build files and start a process to perform an X!Tandem search.
ThermoRawFileParserProcessBuilder	Process builder to run ThermoRawFileParser.
TideIndexProcessBuilder	ProcessBuilder for the Tide index generation.
TideSearchProcessBuilder	ProcessBuilder for the Tide search command.