Hierarchy For All Packages

Package Hierarchies:

• eu.isas.searchgui,
• eu.isas.searchgui.cmd,
• eu.isas.searchgui.gui,
• eu.isas.searchgui.parameters,
• eu.isas.searchgui.processbuilders,
• eu.isas.searchgui.utilities

Class Hierarchy

• java.lang.Object
  • com.compomics.cli.identification_parameters.AbstractIdentificationParametersCli (implements java.util.concurrent.Callable<V>)
    • eu.isas.searchgui.cmd.IdentificationParametersCLI
  • com.compomics.software.CompomicsWrapper
    • eu.isas.searchgui.SearchGUIWrapper
  • java.awt.Component (implements java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable)
    • java.awt.Container
      • javax.swing.JComponent (implements java.io.Serializable)
        • javax.swing.JLabel (implements javax.accessibility.Accessible, javax.swing.SwingConstants)
          • javax.swing.DefaultListCellRenderer (implements javax.swing.ListCellRenderer<E>, java.io.Serializable)
            • eu.isas.searchgui.gui.AlignedListCellRenderer
      • java.awt.Window (implements javax.accessibility.Accessible)
        • java.awt.Dialog
          • javax.swing.JDialog (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
            • eu.isas.searchgui.gui.AdvancedParametersDialog
            • eu.isas.searchgui.gui.PeptideShakerParametersDialog
            • eu.isas.searchgui.gui.SoftwareLocationDialog
        • java.awt.Frame (implements java.awt.MenuContainer)
          • javax.swing.JFrame (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
            • eu.isas.searchgui.gui.SearchGUI (implements com.compomics.software.dialogs.JavaHomeOrMemoryDialogParent)
  • eu.isas.searchgui.cmd.FastaCLI
  • eu.isas.searchgui.cmd.FastaCLIInputBean
  • eu.isas.searchgui.cmd.PathSettingsCLI
  • eu.isas.searchgui.cmd.PathSettingsCLIInputBean
  • eu.isas.searchgui.utilities.Properties
  • eu.isas.searchgui.cmd.SearchCLI (implements java.util.concurrent.Callable<V>)
  • eu.isas.searchgui.cmd.SearchCLIdentificationParametersCLIParams
  • eu.isas.searchgui.cmd.SearchCLIInputBean
  • eu.isas.searchgui.parameters.SearchGUIPathParameters
  • eu.isas.searchgui.processbuilders.SearchGUIProcessBuilder (implements java.lang.Runnable)
    • eu.isas.searchgui.processbuilders.AndromedaProcessBuilder
    • eu.isas.searchgui.processbuilders.CometProcessBuilder
    • eu.isas.searchgui.processbuilders.DirecTagProcessBuilder
    • eu.isas.searchgui.processbuilders.MakeblastdbProcessBuilder
    • eu.isas.searchgui.processbuilders.MetaMorpheusProcessBuilder
    • eu.isas.searchgui.processbuilders.MsAmandaProcessBuilder
    • eu.isas.searchgui.processbuilders.MsConvertProcessBuilder
    • eu.isas.searchgui.processbuilders.MsgfProcessBuilder
    • eu.isas.searchgui.processbuilders.MyriMatchProcessBuilder
    • eu.isas.searchgui.processbuilders.NovorProcessBuilder
    • eu.isas.searchgui.processbuilders.OmssaclProcessBuilder
    • eu.isas.searchgui.processbuilders.PeptideShakerProcessBuilder
    • eu.isas.searchgui.processbuilders.SageProcessBuilder
    • eu.isas.searchgui.processbuilders.TandemProcessBuilder
    • eu.isas.searchgui.processbuilders.ThermoRawFileParserProcessBuilder
    • eu.isas.searchgui.processbuilders.TideIndexProcessBuilder
    • eu.isas.searchgui.processbuilders.TideSearchProcessBuilder
  • eu.isas.searchgui.SearchGUIZipFileChecker
  • eu.isas.searchgui.SearchHandler

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.lang.constant.Constable, java.io.Serializable)
    • eu.isas.searchgui.cmd.FastaCLIParams
    • eu.isas.searchgui.processbuilders.MetaMorpheusProcessBuilder.MetaMorpheusTaskType
    • eu.isas.searchgui.cmd.PathSettingsCLIParams
    • eu.isas.searchgui.cmd.SearchCLIParams
    • eu.isas.searchgui.parameters.SearchGUIPathParameters.SearchGUIPathKey (implements com.compomics.software.settings.PathKey)