# Unimod (Mascot 2.2) - former duplicates in the other & old section. 
Pyro-carbamidomethyl (N-term C)=Pyr
Gln->pyro-Glu (N-term Q)=Pyr
Glu->pyro-Glu (N-term E)=Pyr
Acetyl (K)=Ace
Acetyl (ST)=Ace
Acetyl (N-term)=Ace
Acetyl:2H(3) (K)=AcD3K
Acetyl:2H(3) (N-term)=AcD3
Acetyl:2H(3) (S)=AcD3
Acetyl:2H(3) (T)=AcD3
Acetyl:2H(3) (Y)=AcD3
N-Formyl (Protein)=For
N-Acetyl (Protein)=AcPr
Oxidation (M)=Mox
Deamidated (NQ)=Dam
TNB (N-term)=TNB
Thioacyl (N-term)=Tac
Thioacyl (K)=Tac

# Labels
Label:13C(6) (K)=c13
Label:13C(6) (R)=C13
Label:18O(1) (C-term)=C180i
Label:18O(2) (C-term)=C18O
Label:12C(6)D(3) (R)=C12D3
Label:13C(6)15N(4)D(3) (R)=C13N15D3
O18Ser (S)=S18O
O18Thr (T)=T18O
Lys-SBO18 (K)=KsbH
Tyr-SBO18 (Y)=YsbH
Label:13C(5) (P)=C13
Pro 5xC(13)1xN(15) (P)=C13N15
Label:13C(6)15N(4) (R)=C13N15
Label:13C(5)15NMox (M)=C13N15ox
Label:13C(5)Sulfon (M)=C13Sn
Label:13C(5)N15(1) (M)=C13N15
Arg 13C6-15N4 (R)=C13N15
NMA (R)=NMA
NMAC13 (R)=NMA
NMAC13N15 (R)=NMA
Propionyl (N-term)=prop
Propionyl (K)=prop
Propionyl:13C(3) (N-term)=propC13
Propionyl:13C(3) (K)=propC13
MetSulfon (M)=sulfon
Label:13C(5)15NSulfon (M)=C13N15Sn
Butyl (N-term)=But
Butyl (N-term)=But
Butyl (K)=But
Butinyl (S)=But
Butinyl (T)=But
Butyl:13C(2) (K)=But2C13
Butyl:13C(2) (N-term)=But2C13
Butyl:13C(4) (K)=But4C13
Butyl:13C(4) (N-term)=But4C13
Nethylmaleimide (C)=NEM
Label:K13C(6)AcD3 (K)=C13,AcD3
Acetyl:2H(3)C13(2) (N-term)=AcD3C13
Acetyl:2H(3)C13(2) (K)=AcD3C13
Ace-HHG (N-term)=AceHHG
Acetyl:C13(2) (N-term)=Ac2C13
Acetyl:C13(2) (K)=Ac2C13
Methyl (C-term)=Met
Methyl (DE)=Met

# Other & Old.
Arg 6xC(13) (R)=C13
Pro 5xC(13) (P)=C13
Carbamidomethyl (C)=Cmm
Carbamidomethyloxide (C)=CmmOx
Carbamidomethylsulfon (C) =CmmS
Pyr,Carbamidomethyloxide (C)=PyrCmmOx
Myristoylation (term)=Myr
Amide (C-term)=Ami
Acetyl_heavy (N-term)=AcD3
Acetyl_heavy (K)=AcD3K
Methyl ester (DE)=Met
Methyl ester (C-term)=Met
Phospho (STY)=P
Phospho (ST)=P
Phospho (Y)=P
Sulphone (M)=Sul
Pyro-cmC (N-term camC)=Pyc
Pyro-glu (N-term Q)=Pyr
Pyro-glu (N-term E)=Pyr
Deamidation (NQ)=Dam
HSe=Hse
Propionamide (C)=Prp
Carbamyl (N-term)=Car
thioprop (N-term)=Tpr
thiopropcar (N-term)=Tpc
ThiopropLys (K)=Tpl
ThiopropCarbLys (K)=Tcl
Homoarg (K)=Har
Biotin-S-S-Lysin (K)=BSL
Oxidation - 32 (W)=Wox
Oxidation - 48 (W)=Wo2
Tyrosinamine (Y)=Yam
Tyrosineaminesulfon (Y) =YAS
Tyrosinsulfon (Y) = YS
N-Formyl (Protein) = For
Nitro (Y) = NO
Cysteic_acid (C)=CyA
4H_reagent (K)=4H
Carbamyl (K)=Cak
Phospho-NL (S)=Pnl
Phospho-NL (T)=Pnl
NL_h2o_phospho (ST)=Pnl
hydroxykynurenin (W)=Hkn
kynurenin (W)=Kyn
Oxidation (HW)=Ox
Gly-Gly epsilonNH2(K) = GGe
Methyl (N-term)=Met
Tyrosinamine1 (Y)=Yam1
Lys-DSP (K)=Dsp
GlyGly (K) = GGe
Formyl (Protein N-term)=For



# Bart GH
6Da/0Da loss 5xC13 1xN15 (M) =Mloss
6Da/0Da gain (M) =Mgain
TyrosinamineAcet (Y) =Yamac
Amino (Y) = Yam
Acetyltyrosinamine (Y) = Yamacet
Acetyltyrosinamine (W) = Wamacet
Tyrosinaminesulfon (Y) = Yamsul
MoxC13 (Mox) = MoxC13
Amino (Y) = Yam

# Evy T
NBS (W)=NBS
Hydroxyl (P)=Hyp


# FSBA mods.
Tyr-SBA (Y)=Ysba
Lys-SBA (K)=Ksba
His-SBA (H)=Hsba
Cys-SBA (C)=Csba
Ser-SBA (S)=Ssba
His-SB (H)=Hsb
Cys-SB (C)=Csb
Ser-SB (S)=Ssb
Lys-SB (K)=Ksb
Tyr-SB (Y)=Ysb


# Carbonylation modifications:
# Lysine can be converted in Aminoadipic-semialdehyde
# Arginine and Proline can be converted in Glutamic-semialdehyde
# Hydrazone formed between Aminoadipic-semialdehyde and 6-Hydrazinonicotinic-Acid-Y(NO2)R
Lys-CO1 (K)=CO1
# Hydrazone formed between Glutamic-semialdehyde and 6-Hydrazinonicotinic-Acid-Y(NO2)R
RP-CO1 (RP)=CO1
# Hydrazone formed between 2-amino-3-ketobutyric-Acid and 6-Hydrazinonicotinic-Acid-Y(NO2)R
threo-CO1 (T)=CO1
# Hydrazone formed between Lysine-4-keto-Benaldehyde and 6-Hydrazinonicotinic-Acid-Y(NO2)R (for in vitro tests)
Lys-BCO1 (K)=BCO1
