com.compomics.util.experiment.biology.aminoacids

Class X

java.lang.Object

com.compomics.util.experiment.biology.AminoAcid

com.compomics.util.experiment.biology.aminoacids.X

All Implemented Interfaces:

Serializable

public class X
extends AminoAcid

Unknown amino acid (Mascot).

Author:

Harald Barsnes

See Also:

Serialized Form

Field Summary

Fields inherited from class com.compomics.util.experiment.biology.AminoAcid

A, aminoAcidCombinations, aminoAcidStrings, averageMass, B, C, D, E, F, G, H, I, J, K, L, M, monoisotopicAtomChain, monoisotopicMass, N, name, O, P, Q, R, S, singleLetterCode, standardGeneticCode, subAminoAcidsWithCombination, subAminoAcidsWithoutCombination, T, threeLetterCode, U, V, W, X, Y, Z

Constructor Summary

Constructors

Constructor and Description
X() Constructor.

Method Summary

Modifier and Type	Method and Description
String[]	getStandardGeneticCode() Returns the standard genetic triplets associated to this amino acid.
boolean	iscombination() Indicates whether the amino acid object refers to a combination of amino acids like B, J, Z or X.

Methods inherited from class com.compomics.util.experiment.biology.AminoAcid

equals, getAminoAcid, getAminoAcid, getAminoAcidFromGeneticCode, getAminoAcids, getAminoAcidsList, getCombinations, getMatchingAminoAcid, getMatchingSequence, getMonoisotopicAtomChain, getMonoisotopicMass, getSingleLetterCodeAsChar, getStandardGeneticCodeForCombination, getSubAminoAcids, getSubAminoAcids, getUniqueAminoAcids

Methods inherited from class java.lang.Object

clone, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

X

public X()

Constructor.

Method Detail

getStandardGeneticCode

public String[] getStandardGeneticCode()

Description copied from class: AminoAcid

Returns the standard genetic triplets associated to this amino acid.

Overrides:

getStandardGeneticCode in class AminoAcid

Returns:

the standard genetic triplets associated to this amino acid

iscombination

public boolean iscombination()

Description copied from class: AminoAcid

Indicates whether the amino acid object refers to a combination of amino acids like B, J, Z or X.

Specified by:

iscombination in class AminoAcid

Returns:

an boolean indicating whether the amino acid object refers to a combination of amino acids like B, J, Z or X