Uses of Package
com.compomics.util.experiment.biology.ions

Packages that use com.compomics.util.experiment.biology.ions

Package	Description
com.compomics.util.experiment.biology	Experiment classes related to biological entities.
com.compomics.util.experiment.biology.ions	Experiment classes related to ions.
com.compomics.util.experiment.identification.ptm	Additional PSM scoring classes.
com.compomics.util.experiment.quantification.reporterion	Experiment classes related to reporter ions.

Classes in com.compomics.util.experiment.biology.ions used by com.compomics.util.experiment.biology

Class and Description
Glycan This class represents a glycan.
ReporterIon This class models a reporter ion and is its own factory.

Classes in com.compomics.util.experiment.biology.ions used by com.compomics.util.experiment.biology.ions

Class and Description
ElementaryIon This class represents an elementary ion.
RelatedIon Represents a related ion, i.e., an ion that is related to a given amino acid, and is its own factory.
ReporterIon This class models a reporter ion and is its own factory.

Classes in com.compomics.util.experiment.biology.ions used by com.compomics.util.experiment.identification.ptm

Class and Description
PeptideFragmentIon This class models a peptide fragment ion.

Classes in com.compomics.util.experiment.biology.ions used by com.compomics.util.experiment.quantification.reporterion

Class and Description
ReporterIon This class models a reporter ion and is its own factory.