Uses of Class
com.compomics.util.experiment.massspectrometry.Spectrum

Packages that use Spectrum

Package	Description
com.compomics.util.experiment.identification.spectrum_annotation	Classes used for ms2 spectrum annotation.
com.compomics.util.experiment.massspectrometry	Experiment classes related to spectra.

Uses of Spectrum in com.compomics.util.experiment.identification.spectrum_annotation

Methods in com.compomics.util.experiment.identification.spectrum_annotation with parameters of type Spectrum

Modifier and Type	Method and Description
static ArrayList<IonMatch>	SpectrumAnnotator.matchReporterIon(Ion theoreticIon, int charge, Spectrum spectrum, double massTolerance) Convenience method to match a reporter ion in a spectrum.

Uses of Spectrum in com.compomics.util.experiment.massspectrometry

Subclasses of Spectrum in com.compomics.util.experiment.massspectrometry

Modifier and Type	Class and Description
class	MS1Spectrum This class models an MS1 spectrum.
class	MSnSpectrum This class models an MSn spectrum.

Methods in com.compomics.util.experiment.massspectrometry that return Spectrum

Modifier and Type	Method and Description
Spectrum	SpectrumFactory.getSpectrum(String spectrumKey) Returns the desired spectrum.
Spectrum	SpectrumFactory.getSpectrum(String spectrumFile, String spectrumTitle) Returns the desired spectrum.