Uses of Package
com.compomics.util.experiment

Packages that use com.compomics.util.experiment

Package	Description
com.compomics.util.experiment	Gene factory classes.
com.compomics.util.experiment.identification.psm_scoring	Main PSM scoring class.
com.compomics.util.experiment.io	Experiment IO classes.

Classes in com.compomics.util.experiment used by com.compomics.util.experiment

Class and Description
ProteomicAnalysis This class models a proteomic analysis.
SampleAnalysisSet A sample measurement set is a set of replicates from a common sample.
ShotgunProtocol Generic class gathering information on a shotgun proteomics protocol.

Classes in com.compomics.util.experiment used by com.compomics.util.experiment.identification.psm_scoring

Class and Description
ShotgunProtocol Generic class gathering information on a shotgun proteomics protocol.

Classes in com.compomics.util.experiment used by com.compomics.util.experiment.io

Class and Description
MsExperiment This class represents the experiment.