Uses of Package
com.compomics.util.pride

Packages that use com.compomics.util.pride

Package	Description
com.compomics.util.experiment.biology	Experiment classes related to biological entities.
com.compomics.util.experiment.biology.ions	Experiment classes related to ions.
com.compomics.util.experiment.identification.matches	Experiment classes related to matches.
com.compomics.util.gui.ptm	PTM GUI dialogs.
com.compomics.util.pride	Objects related to mapping to PRIDE.
com.compomics.util.pride.prideobjects	Objects related to mapping experiment annotation to PRIDE.

Classes in com.compomics.util.pride used by com.compomics.util.experiment.biology

Class and Description
CvTerm A simple CvTerm object.

Classes in com.compomics.util.pride used by com.compomics.util.experiment.biology.ions

Class and Description
CvTerm A simple CvTerm object.

Classes in com.compomics.util.pride used by com.compomics.util.experiment.identification.matches

Class and Description
CvTerm A simple CvTerm object.

Classes in com.compomics.util.pride used by com.compomics.util.gui.ptm

Class and Description
PtmToPrideMap Map linking user modification names to Unimod CV terms.

Classes in com.compomics.util.pride used by com.compomics.util.pride

Class and Description
CvTerm A simple CvTerm object.
PrideObjectsFactory This factory manages the pride objects saved in the user folder.
PtmToPrideMap Map linking user modification names to Unimod CV terms.

Classes in com.compomics.util.pride used by com.compomics.util.pride.prideobjects

Class and Description
CvTerm A simple CvTerm object.
PrideObject Interface for a PRIDE object.